Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 DYNLT3P1-201ENST00000378574 347 ntBASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 Y_RNA.535-201ENST00000384612 99 ntBASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 AL122016.1-201ENST00000403365 367 ntBASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 RNU4-26P-201ENST00000410270 107 ntBASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 U3.44-201ENST00000458938 192 ntBASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 RNU7-180P-201ENST00000459240 63 ntBASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 RN7SL283P-201ENST00000489055 303 ntBASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 AC093663.1-201ENST00000497190 394 ntBASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 AC091885.1-201ENST00000506658 268 ntBASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 KLHL2P1-201ENST00000508691 521 ntBASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 FGF7P4-201ENST00000509595 295 ntBASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 TTC39CP1-201ENST00000512513 755 ntBASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 SNORA64.4-201ENST00000516632 81 ntBASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 MTND4P7-201ENST00000523876 130 ntBASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 AC087241.2-201ENST00000535801 324 ntBASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 PSMA3P-201ENST00000555485 635 ntBASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 MIR4795-201ENST00000584182 89 ntBASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 MIR4424-201ENST00000585257 86 ntBASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 AC006116.10-201ENST00000591836 581 ntBASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 AC243960.4-201ENST00000600532 288 ntBASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
CLIP4Q8N3C7 MAPK10-362ENST00000641864 4484 ntBASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 RNU4-76P-201ENST00000364509 141 ntBASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 SNORA51.2-201ENST00000364595 132 ntBASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 NDUFS5P1-201ENST00000405668 289 ntBASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 MTND3P8-201ENST00000412909 339 ntBASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 AC245291.1-201ENST00000419501 328 ntBASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 RPL7P46-201ENST00000425129 740 ntBASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 RPL21P66-201ENST00000426566 466 ntBASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 MRPL50P4-201ENST00000446432 475 ntBASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 AL590639.1-201ENST00000456484 337 ntBASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 RPL23AP11-201ENST00000475260 469 ntBASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 RBBP4P6-201ENST00000508098 202 ntBASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 RNU4-49P-201ENST00000516080 140 ntBASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 RNU6-1038P-201ENST00000516516 104 ntBASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 FAM60BP-201ENST00000578364 658 ntBASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 MIR3690-201ENST00000580266 75 ntBASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 SNORD84-203ENST00000584275 78 ntBASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 AC107294.3-201ENST00000609211 526 ntBASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 AL132765.2-201ENST00000610812 351 ntBASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 uc_338.34-201ENST00000617467 174 ntBASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 AC006026.1-201ENST00000444025 1803 ntBASIC3.19□□□□□ -1.9
CLIP4Q8N3C7 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 ZNF285B-201ENST00000561698 1767 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 RNA5SP124-201ENST00000362739 110 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 SNORD56.3-201ENST00000363507 71 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 RNU6-76P-201ENST00000384060 104 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 SNORA57.1-201ENST00000391227 145 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 CYCSP19-201ENST00000411715 316 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 BX323014.1-201ENST00000412876 237 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 AL645937.1-202ENST00000421799 937 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 FABP5P13-201ENST00000452144 328 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 snoU13.4-201ENST00000458916 104 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 AC108860.1-201ENST00000484521 383 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 AC103851.1-201ENST00000506833 274 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 RNU1-95P-201ENST00000516357 160 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 RNU1-128P-201ENST00000516704 160 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 RN7SKP256-201ENST00000517201 314 ntBASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms