Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC1.42□□□□□ -2.18
USP54Q70EL1 AC233266.2-201ENST00000567067 528 ntBASIC1.42□□□□□ -2.18
USP54Q70EL1 MIR4714-201ENST00000580728 77 ntBASIC1.42□□□□□ -2.18
USP54Q70EL1 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC1.42□□□□□ -2.18
USP54Q70EL1 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC1.42□□□□□ -2.18
USP54Q70EL1 AL137246.1-201ENST00000607072 977 ntBASIC1.42□□□□□ -2.18
USP54Q70EL1 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC1.42□□□□□ -2.18
USP54Q70EL1 MIR532-201ENST00000385025 91 ntBASIC1.41□□□□□ -2.18
USP54Q70EL1 MICF-203ENST00000432679 129 ntBASIC1.41□□□□□ -2.18
USP54Q70EL1 AC015922.2-201ENST00000435593 184 ntBASIC1.41□□□□□ -2.18
USP54Q70EL1 AP000949.1-201ENST00000438328 629 ntBASIC1.41□□□□□ -2.18
USP54Q70EL1 MRPS17P9-201ENST00000511924 393 ntBASIC1.41□□□□□ -2.18
USP54Q70EL1 SCARNA3-201ENST00000517097 143 ntBASIC1.41□□□□□ -2.18
USP54Q70EL1 LSM6P2-201ENST00000552208 177 ntBASIC1.41□□□□□ -2.18
USP54Q70EL1 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC1.41□□□□□ -2.18
USP54Q70EL1 RN7SL793P-201ENST00000583259 296 ntBASIC1.41□□□□□ -2.18
USP54Q70EL1 AL096840.1-201ENST00000603287 93 ntBASIC1.41□□□□□ -2.18
USP54Q70EL1 AC016542.1-201ENST00000608259 493 ntBASIC1.41□□□□□ -2.18
USP54Q70EL1 AP001486.3-201ENST00000615334 372 ntBASIC1.41□□□□□ -2.18
USP54Q70EL1 AC091932.3-201ENST00000624223 323 ntBASIC1.41□□□□□ -2.18
USP54Q70EL1 AC025263.3-201ENST00000622965 1396 ntBASIC1.4□□□□□ -2.18
USP54Q70EL1 SEC63P2-201ENST00000503863 1939 ntBASIC1.4□□□□□ -2.19
USP54Q70EL1 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
USP54Q70EL1 ENSAP3-201ENST00000312710 333 ntBASIC1.4□□□□□ -2.19
USP54Q70EL1 RNU6-543P-201ENST00000362576 108 ntBASIC1.4□□□□□ -2.19
USP54Q70EL1 SNORA51.6-201ENST00000384151 125 ntBASIC1.4□□□□□ -2.19
USP54Q70EL1 RPS3AP24-201ENST00000407896 734 ntBASIC1.4□□□□□ -2.19
USP54Q70EL1 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC1.4□□□□□ -2.19
USP54Q70EL1 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC1.4□□□□□ -2.19
USP54Q70EL1 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC1.4□□□□□ -2.19
USP54Q70EL1 AL357134.1-201ENST00000445848 426 ntBASIC1.4□□□□□ -2.19
USP54Q70EL1 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC1.4□□□□□ -2.19
USP54Q70EL1 NAA50-206ENST00000493454 964 ntTSL 2 BASIC1.4□□□□□ -2.19
USP54Q70EL1 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC1.4□□□□□ -2.19
USP54Q70EL1 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC1.4□□□□□ -2.19
USP54Q70EL1 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC1.4□□□□□ -2.19
USP54Q70EL1 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC1.4□□□□□ -2.19
USP54Q70EL1 AC105224.1-201ENST00000587055 421 ntBASIC1.4□□□□□ -2.19
USP54Q70EL1 AC092608.3-201ENST00000625017 386 ntBASIC1.4□□□□□ -2.19
USP54Q70EL1 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
USP54Q70EL1 MIR7-1-201ENST00000384871 110 ntBASIC1.39□□□□□ -2.19
USP54Q70EL1 OR51A5P-201ENST00000415429 942 ntBASIC1.39□□□□□ -2.19
USP54Q70EL1 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC1.39□□□□□ -2.19
USP54Q70EL1 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC1.39□□□□□ -2.19
USP54Q70EL1 AL512637.2-201ENST00000431287 1256 ntBASIC1.39□□□□□ -2.19
USP54Q70EL1 AC024082.2-201ENST00000434771 238 ntBASIC1.39□□□□□ -2.19
USP54Q70EL1 RAC1P7-201ENST00000445367 377 ntBASIC1.39□□□□□ -2.19
USP54Q70EL1 RPS27P1-201ENST00000450552 247 ntBASIC1.39□□□□□ -2.19
USP54Q70EL1 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC1.39□□□□□ -2.19
USP54Q70EL1 RPS27P23-201ENST00000487608 251 ntBASIC1.39□□□□□ -2.19
USP54Q70EL1 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC1.39□□□□□ -2.19
USP54Q70EL1 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC1.39□□□□□ -2.19
USP54Q70EL1 AC022447.1-201ENST00000515358 464 ntBASIC1.39□□□□□ -2.19
USP54Q70EL1 AC118273.2-201ENST00000532092 465 ntBASIC1.39□□□□□ -2.19
USP54Q70EL1 AC015688.2-201ENST00000584523 262 ntBASIC1.39□□□□□ -2.19
USP54Q70EL1 AC008749.1-201ENST00000597650 306 ntBASIC1.39□□□□□ -2.19
USP54Q70EL1 OR5H6-203ENST00000642105 978 ntBASIC1.39□□□□□ -2.19
USP54Q70EL1 ICE2P2-201ENST00000483823 2787 ntBASIC1.39□□□□□ -2.19
USP54Q70EL1 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC1.39□□□□□ -2.19
USP54Q70EL1 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
USP54Q70EL1 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
USP54Q70EL1 MIR1290-201ENST00000408735 78 ntBASIC1.39□□□□□ -2.19
USP54Q70EL1 RN7SKP158-201ENST00000410453 326 ntBASIC1.39□□□□□ -2.19
USP54Q70EL1 AC099548.1-201ENST00000421443 426 ntBASIC1.39□□□□□ -2.19
USP54Q70EL1 AL591704.2-201ENST00000421658 181 ntBASIC1.39□□□□□ -2.19
USP54Q70EL1 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC1.39□□□□□ -2.19
USP54Q70EL1 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC1.39□□□□□ -2.19
USP54Q70EL1 PABPC1P3-201ENST00000469174 459 ntBASIC1.39□□□□□ -2.19
USP54Q70EL1 RPL30P5-201ENST00000494923 336 ntBASIC1.39□□□□□ -2.19
USP54Q70EL1 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC1.39□□□□□ -2.19
USP54Q70EL1 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC1.39□□□□□ -2.19
USP54Q70EL1 AP005902.1-201ENST00000521358 186 ntBASIC1.39□□□□□ -2.19
USP54Q70EL1 ZNF705CP-201ENST00000530515 889 ntBASIC1.39□□□□□ -2.19
USP54Q70EL1 AC022880.1-201ENST00000534017 973 ntBASIC1.39□□□□□ -2.19
USP54Q70EL1 CR383656.7-201ENST00000548164 174 ntBASIC1.39□□□□□ -2.19
USP54Q70EL1 AC090888.1-201ENST00000561335 1141 ntBASIC1.39□□□□□ -2.19
USP54Q70EL1 AC091925.2-201ENST00000625059 256 ntBASIC1.39□□□□□ -2.19
USP54Q70EL1 AL442644.1-201ENST00000454390 3105 ntBASIC1.38□□□□□ -2.19
USP54Q70EL1 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC1.38□□□□□ -2.19
USP54Q70EL1 RNU6-1328P-201ENST00000410938 106 ntBASIC1.38□□□□□ -2.19
USP54Q70EL1 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC1.38□□□□□ -2.19
USP54Q70EL1 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC1.38□□□□□ -2.19
USP54Q70EL1 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC1.38□□□□□ -2.19
USP54Q70EL1 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC1.38□□□□□ -2.19
USP54Q70EL1 AL121821.2-201ENST00000556081 394 ntBASIC1.38□□□□□ -2.19
USP54Q70EL1 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC1.38□□□□□ -2.19
USP54Q70EL1 AC023825.1-201ENST00000566704 1030 ntBASIC1.38□□□□□ -2.19
USP54Q70EL1 AC078899.2-201ENST00000595282 212 ntBASIC1.38□□□□□ -2.19
USP54Q70EL1 AP000254.1-201ENST00000609934 520 ntBASIC1.38□□□□□ -2.19
USP54Q70EL1 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
USP54Q70EL1 AC040168.1-201ENST00000623594 991 ntBASIC1.38□□□□□ -2.19
USP54Q70EL1 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.38□□□□□ -2.19
USP54Q70EL1 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
USP54Q70EL1 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
USP54Q70EL1 RNU6-270P-201ENST00000364131 105 ntBASIC1.37□□□□□ -2.19
USP54Q70EL1 SNORD82-201ENST00000365530 70 ntBASIC1.37□□□□□ -2.19
USP54Q70EL1 MIR150-201ENST00000385048 84 ntBASIC1.37□□□□□ -2.19
USP54Q70EL1 AC068050.1-201ENST00000394891 380 ntBASIC1.37□□□□□ -2.19
USP54Q70EL1 RNU6-77P-201ENST00000410554 91 ntBASIC1.37□□□□□ -2.19
USP54Q70EL1 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC1.37□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms