Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RPL9P33-201ENST00000484311 566 ntBASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 AC079382.1-201ENST00000493346 557 ntBASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 AC097462.2-201ENST00000504623 481 ntBASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 AC117522.1-201ENST00000509821 380 ntBASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 Y_RNA.689-201ENST00000516589 107 ntBASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 RNU4ATAC3P-201ENST00000516699 126 ntBASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 SNORA31.26-201ENST00000517250 137 ntBASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 OR4R1P-201ENST00000529879 463 ntBASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 OR5AL2P-201ENST00000532185 920 ntBASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 AHI1-217ENST00000534469 680 ntTSL 3 BASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 MIR7106-201ENST00000612419 65 ntBASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 SEPT14P19-203ENST00000633205 211 ntBASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 AC007656.2-201ENST00000624902 4547 ntBASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 GABRG2-229ENST00000641017 3628 ntBASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 UBE2L2-201ENST00000254302 429 ntBASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 AC073343.1-201ENST00000328239 651 ntBASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 Y_RNA.372-201ENST00000365599 102 ntBASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 SNORA24.1-201ENST00000384401 135 ntBASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 AL591416.1-201ENST00000404015 867 ntBASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 AF274854.1-201ENST00000413236 615 ntBASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 NDUFB4P7-201ENST00000423198 363 ntBASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 AL512844.2-201ENST00000433990 593 ntBASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 BX679664.1-201ENST00000434429 253 ntBASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 RPL23AP67-201ENST00000465341 474 ntBASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 AC108078.2-201ENST00000510750 236 ntBASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 SNORA70.19-201ENST00000516717 90 ntBASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 RNU6-928P-201ENST00000516876 104 ntBASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 RN7SKP258-201ENST00000517151 304 ntBASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 MTCYBP20-201ENST00000524239 1129 ntBASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 AC103843.2-201ENST00000530523 682 ntBASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 OR5B19P-201ENST00000531766 928 ntBASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 HMGB1P14-201ENST00000557424 591 ntBASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 AC067852.3-201ENST00000589177 561 ntBASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 AC025449.1-201ENST00000603896 529 ntBASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 AC013562.2-201ENST00000611632 603 ntBASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
PDLIM3Q53GG5 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 MTND5P29-201ENST00000458676 1807 ntBASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 OR56A5-201ENST00000340110 738 ntBASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 Y_RNA.367-201ENST00000365544 101 ntBASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 AL139397.2-201ENST00000404529 772 ntBASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 MED13P1-201ENST00000428342 171 ntBASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 SAR1AP4-201ENST00000429225 591 ntBASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 CYCSP4-201ENST00000429682 331 ntBASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 TAAR7P-201ENST00000436141 242 ntBASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 MTND1P1-201ENST00000445453 368 ntBASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 AC079781.2-201ENST00000446424 169 ntBASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 AC010099.1-201ENST00000455434 375 ntBASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 RPS29P15-201ENST00000458329 171 ntBASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 RPL30P5-201ENST00000494923 336 ntBASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 AC116562.3-201ENST00000506136 177 ntBASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 AC091133.4-201ENST00000511142 308 ntBASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 RNU4ATAC15P-201ENST00000516415 126 ntBASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 RNU6-506P-201ENST00000516553 94 ntBASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 RNA5SP290-201ENST00000517133 127 ntBASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 AP001646.1-201ENST00000527936 915 ntBASIC2.84□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 147.1 ms