Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 ISCA1P3-201ENST00000577104 373 ntBASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 MIR4658-201ENST00000584344 65 ntBASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 KC877982.1-201ENST00000602313 470 ntBASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 AP000403.1-201ENST00000603349 851 ntBASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 AC135507.1-201ENST00000607214 561 ntBASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 AC108747.1-201ENST00000609508 535 ntBASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 AP000240.1-201ENST00000609910 452 ntBASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 DUSP12P1-201ENST00000612874 516 ntBASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 U4.3-201ENST00000621047 82 ntBASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 AC079416.3-201ENST00000624479 549 ntBASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 SNORA5B-201ENST00000363786 132 ntBASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 SNORA67.1-201ENST00000364749 141 ntBASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 MIR144-201ENST00000384886 86 ntBASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 RPS20P2-201ENST00000402520 389 ntBASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 AL021407.1-201ENST00000404531 386 ntBASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 RPS4XP7-201ENST00000406274 780 ntBASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 RPL26P27-201ENST00000414397 437 ntBASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 NUP35P1-201ENST00000422734 947 ntBASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 MTCO3P30-201ENST00000426425 670 ntBASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 HMGB1P9-201ENST00000429856 646 ntBASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 RPL36AP53-201ENST00000432891 316 ntBASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 GDI2P2-201ENST00000445131 608 ntBASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 RPL37P6-201ENST00000460682 294 ntBASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 AL049873.1-201ENST00000480540 376 ntBASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 RN7SL432P-201ENST00000484057 298 ntBASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 NDUFB4P2-201ENST00000509515 391 ntBASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 AC107222.1-201ENST00000510899 637 ntBASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 AC116347.2-201ENST00000514912 523 ntBASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 RNU6-1003P-201ENST00000517099 105 ntBASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 AC123904.2-201ENST00000548059 300 ntBASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 PRELID2P1-201ENST00000552837 301 ntBASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 MIR3146-201ENST00000580367 79 ntBASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.66□□□□□ -1.98
CCDC40Q4G0X9 AC069528.2-201ENST00000624849 1991 ntBASIC2.65□□□□□ -1.98
CCDC40Q4G0X9 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.98
CCDC40Q4G0X9 AC010889.1-201ENST00000566193 2666 ntBASIC2.65□□□□□ -1.99
CCDC40Q4G0X9 RNU1-51P-201ENST00000365345 176 ntBASIC2.65□□□□□ -1.99
CCDC40Q4G0X9 RNU6-701P-201ENST00000384059 107 ntBASIC2.65□□□□□ -1.99
CCDC40Q4G0X9 RNU6-14P-201ENST00000384630 106 ntBASIC2.65□□□□□ -1.99
CCDC40Q4G0X9 RPL17P50-201ENST00000396131 546 ntBASIC2.65□□□□□ -1.99
CCDC40Q4G0X9 U3.37-201ENST00000408528 213 ntBASIC2.65□□□□□ -1.99
CCDC40Q4G0X9 AC007064.1-201ENST00000412238 351 ntBASIC2.65□□□□□ -1.99
CCDC40Q4G0X9 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC2.65□□□□□ -1.99
CCDC40Q4G0X9 RPL23AP39-201ENST00000415533 405 ntBASIC2.65□□□□□ -1.99
CCDC40Q4G0X9 AC096649.2-201ENST00000416186 393 ntBASIC2.65□□□□□ -1.99
CCDC40Q4G0X9 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.65□□□□□ -1.99
CCDC40Q4G0X9 HMGB1P27-201ENST00000431429 603 ntBASIC2.65□□□□□ -1.99
CCDC40Q4G0X9 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC2.65□□□□□ -1.99
CCDC40Q4G0X9 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC2.65□□□□□ -1.99
CCDC40Q4G0X9 AC108938.1-201ENST00000451204 136 ntBASIC2.65□□□□□ -1.99
CCDC40Q4G0X9 AL109933.2-201ENST00000452651 260 ntBASIC2.65□□□□□ -1.99
CCDC40Q4G0X9 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.65□□□□□ -1.99
CCDC40Q4G0X9 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.65□□□□□ -1.99
CCDC40Q4G0X9 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC2.65□□□□□ -1.99
CCDC40Q4G0X9 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.65□□□□□ -1.99
CCDC40Q4G0X9 NAP1L1P1-201ENST00000524793 1063 ntBASIC2.65□□□□□ -1.99
CCDC40Q4G0X9 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC2.65□□□□□ -1.99
CCDC40Q4G0X9 ELOCP32-201ENST00000548625 324 ntBASIC2.65□□□□□ -1.99
CCDC40Q4G0X9 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.65□□□□□ -1.99
CCDC40Q4G0X9 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC2.65□□□□□ -1.99
CCDC40Q4G0X9 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC2.65□□□□□ -1.99
CCDC40Q4G0X9 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC2.65□□□□□ -1.99
CCDC40Q4G0X9 AC107294.1-201ENST00000609524 467 ntBASIC2.65□□□□□ -1.99
CCDC40Q4G0X9 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC2.65□□□□□ -1.99
CCDC40Q4G0X9 AC009159.1-201ENST00000618386 642 ntBASIC2.65□□□□□ -1.99
CCDC40Q4G0X9 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.65□□□□□ -1.99
CCDC40Q4G0X9 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 RNY3P13-201ENST00000365542 102 ntBASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 MIR518C-201ENST00000384822 101 ntBASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 RNU6-1328P-201ENST00000410938 106 ntBASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 ELOCP17-201ENST00000414751 326 ntBASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 RPS27AP14-201ENST00000422868 454 ntBASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 COX6CP12-201ENST00000446748 202 ntBASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.64□□□□□ -1.99
CCDC40Q4G0X9 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC2.64□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms