Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.79□□□□□ -1.8
COL4A3Q01955 AC009570.1-201ENST00000609599 745 ntBASIC3.79□□□□□ -1.8
COL4A3Q01955 AC011890.2-201ENST00000613393 294 ntBASIC3.79□□□□□ -1.8
COL4A3Q01955 NAA50-211ENST00000630058 177 ntTSL 5 BASIC3.79□□□□□ -1.8
COL4A3Q01955 AL732372.2-225ENST00000642124 456 ntBASIC3.79□□□□□ -1.8
COL4A3Q01955 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
COL4A3Q01955 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC3.79□□□□□ -1.8
COL4A3Q01955 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
COL4A3Q01955 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL4A3Q01955 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
COL4A3Q01955 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL4A3Q01955 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL4A3Q01955 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
COL4A3Q01955 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.79□□□□□ -1.8
COL4A3Q01955 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
COL4A3Q01955 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC3.78□□□□□ -1.8
COL4A3Q01955 RNU6-393P-201ENST00000384475 107 ntBASIC3.78□□□□□ -1.8
COL4A3Q01955 RNU6-1222P-201ENST00000384615 107 ntBASIC3.78□□□□□ -1.8
COL4A3Q01955 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
COL4A3Q01955 RNU6-1050P-201ENST00000410388 107 ntBASIC3.78□□□□□ -1.8
COL4A3Q01955 RNA5SP111-201ENST00000411386 101 ntBASIC3.78□□□□□ -1.8
COL4A3Q01955 UBE2FP1-201ENST00000416536 447 ntBASIC3.78□□□□□ -1.8
COL4A3Q01955 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
COL4A3Q01955 HIGD1AP11-201ENST00000438361 280 ntBASIC3.78□□□□□ -1.8
COL4A3Q01955 Z98949.2-201ENST00000440996 144 ntBASIC3.78□□□□□ -1.8
COL4A3Q01955 U8.20-201ENST00000459445 131 ntBASIC3.78□□□□□ -1.8
COL4A3Q01955 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.78□□□□□ -1.8
COL4A3Q01955 RN7SL432P-201ENST00000484057 298 ntBASIC3.78□□□□□ -1.8
COL4A3Q01955 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.78□□□□□ -1.8
COL4A3Q01955 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC3.78□□□□□ -1.8
COL4A3Q01955 TBCAP3-201ENST00000512475 312 ntBASIC3.78□□□□□ -1.8
COL4A3Q01955 SNORA14.1-201ENST00000516113 141 ntBASIC3.78□□□□□ -1.8
COL4A3Q01955 RNU6-264P-201ENST00000517134 104 ntBASIC3.78□□□□□ -1.8
COL4A3Q01955 IGKV2D-36-201ENST00000518643 226 ntBASIC3.78□□□□□ -1.8
COL4A3Q01955 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.78□□□□□ -1.8
COL4A3Q01955 AC090877.1-201ENST00000561418 344 ntBASIC3.78□□□□□ -1.8
COL4A3Q01955 MIR5692C1-201ENST00000585309 91 ntBASIC3.78□□□□□ -1.8
COL4A3Q01955 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.78□□□□□ -1.8
COL4A3Q01955 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
COL4A3Q01955 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
COL4A3Q01955 CDC27P3-201ENST00000635418 1910 ntBASIC3.78□□□□□ -1.8
COL4A3Q01955 LINC01109-201ENST00000603837 3081 ntBASIC3.78□□□□□ -1.8
COL4A3Q01955 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
COL4A3Q01955 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
COL4A3Q01955 PNPT1P2-201ENST00000456768 2050 ntBASIC3.78□□□□□ -1.8
COL4A3Q01955 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.78□□□□□ -1.8
COL4A3Q01955 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
COL4A3Q01955 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
COL4A3Q01955 AC103710.2-202ENST00000641454 2853 ntBASIC3.78□□□□□ -1.8
COL4A3Q01955 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC3.78□□□□□ -1.8
COL4A3Q01955 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
COL4A3Q01955 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC3.78□□□□□ -1.8
COL4A3Q01955 RNU6-238P-201ENST00000363313 106 ntBASIC3.78□□□□□ -1.81
COL4A3Q01955 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.81
COL4A3Q01955 RNU6-946P-201ENST00000383878 107 ntBASIC3.78□□□□□ -1.81
COL4A3Q01955 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.78□□□□□ -1.81
COL4A3Q01955 RNA5SP120-201ENST00000410900 112 ntBASIC3.78□□□□□ -1.81
COL4A3Q01955 BX682237.1-201ENST00000415016 335 ntBASIC3.78□□□□□ -1.81
COL4A3Q01955 DPPA2P2-201ENST00000418220 897 ntBASIC3.78□□□□□ -1.81
COL4A3Q01955 AC099336.2-201ENST00000422457 254 ntBASIC3.78□□□□□ -1.81
COL4A3Q01955 RPS12P5-201ENST00000423449 371 ntBASIC3.78□□□□□ -1.81
COL4A3Q01955 FABP5P13-201ENST00000452144 328 ntBASIC3.78□□□□□ -1.81
COL4A3Q01955 AC099560.2-201ENST00000457554 255 ntBASIC3.78□□□□□ -1.81
COL4A3Q01955 DYNLL1P5-201ENST00000467158 270 ntBASIC3.78□□□□□ -1.81
COL4A3Q01955 AC104472.2-201ENST00000469035 601 ntBASIC3.78□□□□□ -1.81
COL4A3Q01955 AC128713.1-201ENST00000471495 306 ntBASIC3.78□□□□□ -1.81
COL4A3Q01955 RPL7P23-201ENST00000493874 747 ntBASIC3.78□□□□□ -1.81
COL4A3Q01955 AC116337.1-201ENST00000509680 687 ntBASIC3.78□□□□□ -1.81
COL4A3Q01955 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.78□□□□□ -1.81
COL4A3Q01955 RNU6-1069P-201ENST00000516612 133 ntBASIC3.78□□□□□ -1.81
COL4A3Q01955 Y_RNA.708-201ENST00000516950 96 ntBASIC3.78□□□□□ -1.81
COL4A3Q01955 RNU6-699P-201ENST00000517081 110 ntBASIC3.78□□□□□ -1.81
COL4A3Q01955 RNU1-54P-201ENST00000517181 120 ntBASIC3.78□□□□□ -1.81
COL4A3Q01955 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.78□□□□□ -1.81
COL4A3Q01955 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.78□□□□□ -1.81
COL4A3Q01955 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC3.78□□□□□ -1.81
COL4A3Q01955 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.78□□□□□ -1.81
COL4A3Q01955 AL031176.1-201ENST00000604554 466 ntBASIC3.78□□□□□ -1.81
COL4A3Q01955 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL4A3Q01955 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL4A3Q01955 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC3.77□□□□□ -1.81
COL4A3Q01955 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.77□□□□□ -1.81
COL4A3Q01955 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL4A3Q01955 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
COL4A3Q01955 AC005183.1-201ENST00000603687 1979 ntBASIC3.77□□□□□ -1.81
COL4A3Q01955 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
COL4A3Q01955 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL4A3Q01955 RNU6-490P-201ENST00000362985 107 ntBASIC3.77□□□□□ -1.81
COL4A3Q01955 Y_RNA.404-201ENST00000383978 102 ntBASIC3.77□□□□□ -1.81
COL4A3Q01955 RNU6-890P-201ENST00000384121 107 ntBASIC3.77□□□□□ -1.81
COL4A3Q01955 RNU6-434P-201ENST00000384376 107 ntBASIC3.77□□□□□ -1.81
COL4A3Q01955 RNU6-328P-201ENST00000390887 106 ntBASIC3.77□□□□□ -1.81
COL4A3Q01955 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL4A3Q01955 AC080125.1-201ENST00000414888 684 ntBASIC3.77□□□□□ -1.81
COL4A3Q01955 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC3.77□□□□□ -1.81
COL4A3Q01955 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC3.77□□□□□ -1.81
COL4A3Q01955 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC3.77□□□□□ -1.81
COL4A3Q01955 RPL21P112-201ENST00000434403 463 ntBASIC3.77□□□□□ -1.81
COL4A3Q01955 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC3.77□□□□□ -1.81
COL4A3Q01955 OARD1-209ENST00000471367 401 ntTSL 2 BASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 138.7 ms