Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 MRPL50P2-201ENST00000416821 482 ntBASIC3.5□□□□□ -1.85
CTCFP49711 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC3.5□□□□□ -1.85
CTCFP49711 AL451054.2-201ENST00000420896 202 ntBASIC3.5□□□□□ -1.85
CTCFP49711 RPL7P46-201ENST00000425129 740 ntBASIC3.5□□□□□ -1.85
CTCFP49711 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC3.5□□□□□ -1.85
CTCFP49711 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC3.5□□□□□ -1.85
CTCFP49711 USP9YP15-201ENST00000442391 422 ntBASIC3.5□□□□□ -1.85
CTCFP49711 AC020550.1-201ENST00000447385 163 ntBASIC3.5□□□□□ -1.85
CTCFP49711 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC3.5□□□□□ -1.85
CTCFP49711 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.5□□□□□ -1.85
CTCFP49711 HMGN1P18-201ENST00000457642 277 ntBASIC3.5□□□□□ -1.85
CTCFP49711 RPS20P20-201ENST00000460498 340 ntBASIC3.5□□□□□ -1.85
CTCFP49711 KLF3P2-201ENST00000465138 268 ntBASIC3.5□□□□□ -1.85
CTCFP49711 RN7SL283P-201ENST00000489055 303 ntBASIC3.5□□□□□ -1.85
CTCFP49711 KCTD9P5-201ENST00000504141 1170 ntBASIC3.5□□□□□ -1.85
CTCFP49711 ARL4AP2-201ENST00000507378 601 ntBASIC3.5□□□□□ -1.85
CTCFP49711 MTND3P5-201ENST00000512798 333 ntBASIC3.5□□□□□ -1.85
CTCFP49711 RNU6-390P-201ENST00000516259 103 ntBASIC3.5□□□□□ -1.85
CTCFP49711 RNU6-1256P-201ENST00000516539 103 ntBASIC3.5□□□□□ -1.85
CTCFP49711 SNORA64.4-201ENST00000516632 81 ntBASIC3.5□□□□□ -1.85
CTCFP49711 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
CTCFP49711 AC135279.1-201ENST00000543493 504 ntBASIC3.5□□□□□ -1.85
CTCFP49711 AC093012.1-202ENST00000549403 582 ntBASIC3.5□□□□□ -1.85
CTCFP49711 HMGB1P14-201ENST00000557424 591 ntBASIC3.5□□□□□ -1.85
CTCFP49711 AC103987.3-201ENST00000582071 292 ntBASIC3.5□□□□□ -1.85
CTCFP49711 AC004832.5-201ENST00000608677 401 ntBASIC3.5□□□□□ -1.85
CTCFP49711 AC011939.3-201ENST00000613686 466 ntBASIC3.5□□□□□ -1.85
CTCFP49711 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.5□□□□□ -1.85
CTCFP49711 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
CTCFP49711 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.5□□□□□ -1.85
CTCFP49711 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
CTCFP49711 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
CTCFP49711 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
CTCFP49711 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
CTCFP49711 U3.11-201ENST00000364476 212 ntBASIC3.49□□□□□ -1.85
CTCFP49711 Y_RNA.269-201ENST00000364685 89 ntBASIC3.49□□□□□ -1.85
CTCFP49711 DYNLT3P1-201ENST00000378574 347 ntBASIC3.49□□□□□ -1.85
CTCFP49711 MIR592-201ENST00000384959 97 ntBASIC3.49□□□□□ -1.85
CTCFP49711 AL360182.1-201ENST00000397433 468 ntBASIC3.49□□□□□ -1.85
CTCFP49711 RNU2-36P-201ENST00000410361 191 ntBASIC3.49□□□□□ -1.85
CTCFP49711 RNU2-8P-201ENST00000410727 190 ntBASIC3.49□□□□□ -1.85
CTCFP49711 C1DP2-201ENST00000418167 426 ntBASIC3.49□□□□□ -1.85
CTCFP49711 AL356867.1-201ENST00000429623 299 ntBASIC3.49□□□□□ -1.85
CTCFP49711 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC3.49□□□□□ -1.85
CTCFP49711 OR2B8P-201ENST00000432841 938 ntBASIC3.49□□□□□ -1.85
CTCFP49711 AC119618.1-201ENST00000434191 222 ntBASIC3.49□□□□□ -1.85
CTCFP49711 RPS20P5-201ENST00000434808 360 ntBASIC3.49□□□□□ -1.85
CTCFP49711 TAAR7P-201ENST00000436141 242 ntBASIC3.49□□□□□ -1.85
CTCFP49711 MTND2P24-201ENST00000453434 806 ntBASIC3.49□□□□□ -1.85
CTCFP49711 RBM43P1-201ENST00000476891 1081 ntBASIC3.49□□□□□ -1.85
CTCFP49711 RPL30P14-201ENST00000482744 348 ntBASIC3.49□□□□□ -1.85
CTCFP49711 RNA5SP445-201ENST00000515889 115 ntBASIC3.49□□□□□ -1.85
CTCFP49711 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC3.49□□□□□ -1.85
CTCFP49711 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC3.49□□□□□ -1.85
CTCFP49711 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.49□□□□□ -1.85
CTCFP49711 AC124947.2-202ENST00000552735 133 ntBASIC3.49□□□□□ -1.85
CTCFP49711 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC3.49□□□□□ -1.85
CTCFP49711 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC3.49□□□□□ -1.85
CTCFP49711 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.49□□□□□ -1.85
CTCFP49711 RPL23AP84-201ENST00000571193 464 ntBASIC3.49□□□□□ -1.85
CTCFP49711 AC012213.3-201ENST00000577199 777 ntBASIC3.49□□□□□ -1.85
CTCFP49711 AC017071.1-201ENST00000564407 2204 ntBASIC3.49□□□□□ -1.85
CTCFP49711 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
CTCFP49711 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
CTCFP49711 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.49□□□□□ -1.85
CTCFP49711 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
CTCFP49711 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.48□□□□□ -1.85
CTCFP49711 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CTCFP49711 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CTCFP49711 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CTCFP49711 ADAM3A-203ENST00000461344 2157 ntBASIC3.48□□□□□ -1.85
CTCFP49711 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.48□□□□□ -1.85
CTCFP49711 RNA5SP383-201ENST00000362934 120 ntBASIC3.48□□□□□ -1.85
CTCFP49711 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
CTCFP49711 RPS3AP36-201ENST00000398190 775 ntBASIC3.48□□□□□ -1.85
CTCFP49711 RNA5SP38-201ENST00000410750 119 ntBASIC3.48□□□□□ -1.85
CTCFP49711 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.48□□□□□ -1.85
CTCFP49711 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC3.48□□□□□ -1.85
CTCFP49711 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC3.48□□□□□ -1.85
CTCFP49711 FCF1P1-201ENST00000432690 571 ntBASIC3.48□□□□□ -1.85
CTCFP49711 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC3.48□□□□□ -1.85
CTCFP49711 AC073614.1-201ENST00000438690 650 ntBASIC3.48□□□□□ -1.85
CTCFP49711 AC124916.1-201ENST00000444020 547 ntBASIC3.48□□□□□ -1.85
CTCFP49711 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.48□□□□□ -1.85
CTCFP49711 MTCO2P7-201ENST00000446518 666 ntBASIC3.48□□□□□ -1.85
CTCFP49711 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC3.48□□□□□ -1.85
CTCFP49711 RPL30P5-201ENST00000494923 336 ntBASIC3.48□□□□□ -1.85
CTCFP49711 TTC39CP1-201ENST00000512513 755 ntBASIC3.48□□□□□ -1.85
CTCFP49711 RN7SKP282-201ENST00000516824 299 ntBASIC3.48□□□□□ -1.85
CTCFP49711 AC104027.1-201ENST00000521887 300 ntBASIC3.48□□□□□ -1.85
CTCFP49711 AC022616.3-201ENST00000523940 148 ntBASIC3.48□□□□□ -1.85
CTCFP49711 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.48□□□□□ -1.85
CTCFP49711 AC128657.1-201ENST00000549459 145 ntBASIC3.48□□□□□ -1.85
CTCFP49711 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC3.48□□□□□ -1.85
CTCFP49711 MIR3167-201ENST00000579623 85 ntBASIC3.48□□□□□ -1.85
CTCFP49711 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.48□□□□□ -1.85
CTCFP49711 NRBF2P1-201ENST00000587407 859 ntBASIC3.48□□□□□ -1.85
CTCFP49711 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC3.48□□□□□ -1.85
CTCFP49711 AC103591.3-201ENST00000608684 209 ntBASIC3.48□□□□□ -1.85
CTCFP49711 AL589743.7-201ENST00000612637 233 ntBASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms