Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC008568.2-201ENST00000623862 2313 ntBASIC2.04□□□□□ -2.08
SCN4AP35499 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
SCN4AP35499 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
SCN4AP35499 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
SCN4AP35499 RNU6-289P-201ENST00000364093 107 ntBASIC2.04□□□□□ -2.08
SCN4AP35499 RNU6-374P-201ENST00000364146 108 ntBASIC2.04□□□□□ -2.08
SCN4AP35499 RNA5SP160-201ENST00000364866 120 ntBASIC2.04□□□□□ -2.08
SCN4AP35499 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.04□□□□□ -2.08
SCN4AP35499 AL645568.3-201ENST00000433683 316 ntBASIC2.04□□□□□ -2.08
SCN4AP35499 MTND5P14-201ENST00000441481 1267 ntBASIC2.04□□□□□ -2.08
SCN4AP35499 MTND1P9-201ENST00000453775 944 ntBASIC2.04□□□□□ -2.08
SCN4AP35499 RPL31P60-201ENST00000478450 367 ntBASIC2.04□□□□□ -2.08
SCN4AP35499 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC2.04□□□□□ -2.08
SCN4AP35499 AP001804.3-201ENST00000525146 880 ntBASIC2.04□□□□□ -2.08
SCN4AP35499 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC2.04□□□□□ -2.08
SCN4AP35499 MIR4421-201ENST00000578133 69 ntBASIC2.04□□□□□ -2.08
SCN4AP35499 AC015688.2-201ENST00000584523 262 ntBASIC2.04□□□□□ -2.08
SCN4AP35499 AL353997.4-201ENST00000586196 166 ntBASIC2.04□□□□□ -2.08
SCN4AP35499 AP002826.1-201ENST00000608835 315 ntBASIC2.04□□□□□ -2.08
SCN4AP35499 AC006329.2-201ENST00000611491 394 ntBASIC2.04□□□□□ -2.08
SCN4AP35499 MIR6779-201ENST00000617283 64 ntBASIC2.04□□□□□ -2.08
SCN4AP35499 AC006386.1-201ENST00000619436 415 ntBASIC2.04□□□□□ -2.08
SCN4AP35499 AL360181.4-201ENST00000621752 134 ntBASIC2.04□□□□□ -2.08
SCN4AP35499 AC068787.1-201ENST00000623908 691 ntBASIC2.04□□□□□ -2.08
SCN4AP35499 UGP2-231ENST00000627474 264 ntTSL 5 BASIC2.04□□□□□ -2.08
SCN4AP35499 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC2.04□□□□□ -2.08
SCN4AP35499 PCF11-AS1-201ENST00000602322 1516 ntBASIC2.04□□□□□ -2.08
SCN4AP35499 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
SCN4AP35499 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
SCN4AP35499 RNU6-1242P-201ENST00000391052 103 ntBASIC2.03□□□□□ -2.08
SCN4AP35499 HMGB1P17-201ENST00000403495 628 ntBASIC2.03□□□□□ -2.08
SCN4AP35499 AC083875.1-201ENST00000419509 405 ntBASIC2.03□□□□□ -2.08
SCN4AP35499 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC2.03□□□□□ -2.08
SCN4AP35499 AL358075.3-201ENST00000426289 226 ntBASIC2.03□□□□□ -2.08
SCN4AP35499 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC2.03□□□□□ -2.08
SCN4AP35499 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC2.03□□□□□ -2.08
SCN4AP35499 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC2.03□□□□□ -2.08
SCN4AP35499 snoU13.4-201ENST00000458916 104 ntBASIC2.03□□□□□ -2.08
SCN4AP35499 RPS23P3-201ENST00000470993 430 ntBASIC2.03□□□□□ -2.08
SCN4AP35499 CDC42P4-201ENST00000510507 563 ntBASIC2.03□□□□□ -2.08
SCN4AP35499 RNA5SP216-201ENST00000516111 123 ntBASIC2.03□□□□□ -2.08
SCN4AP35499 RNA5SP102-201ENST00000516865 106 ntBASIC2.03□□□□□ -2.08
SCN4AP35499 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC2.03□□□□□ -2.08
SCN4AP35499 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC2.03□□□□□ -2.08
SCN4AP35499 DNAJC8P1-201ENST00000554535 372 ntBASIC2.03□□□□□ -2.08
SCN4AP35499 MTND4P33-201ENST00000556706 766 ntBASIC2.03□□□□□ -2.08
SCN4AP35499 MIR5194-201ENST00000582634 120 ntBASIC2.03□□□□□ -2.08
SCN4AP35499 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC2.03□□□□□ -2.08
SCN4AP35499 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC2.03□□□□□ -2.08
SCN4AP35499 AC011458.1-201ENST00000604034 617 ntBASIC2.03□□□□□ -2.08
SCN4AP35499 AL139344.1-201ENST00000605228 195 ntBASIC2.03□□□□□ -2.08
SCN4AP35499 AL390208.1-201ENST00000605885 644 ntBASIC2.03□□□□□ -2.08
SCN4AP35499 AC106028.5-201ENST00000610332 395 ntBASIC2.03□□□□□ -2.08
SCN4AP35499 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC2.03□□□□□ -2.08
SCN4AP35499 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
SCN4AP35499 MTND4P9-201ENST00000507819 1346 ntBASIC2.03□□□□□ -2.08
SCN4AP35499 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.03□□□□□ -2.08
SCN4AP35499 AC002546.1-201ENST00000588041 2504 ntBASIC2.03□□□□□ -2.08
SCN4AP35499 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.03□□□□□ -2.08
SCN4AP35499 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.03□□□□□ -2.08
SCN4AP35499 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.09
SCN4AP35499 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.03□□□□□ -2.09
SCN4AP35499 RNU6-413P-201ENST00000384115 107 ntBASIC2.03□□□□□ -2.09
SCN4AP35499 TAS2R15P-201ENST00000390674 928 ntBASIC2.03□□□□□ -2.09
SCN4AP35499 SNRPEP2-201ENST00000397592 279 ntBASIC2.03□□□□□ -2.09
SCN4AP35499 RPL17P12-201ENST00000413391 526 ntBASIC2.03□□□□□ -2.09
SCN4AP35499 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.03□□□□□ -2.09
SCN4AP35499 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC2.03□□□□□ -2.09
SCN4AP35499 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC2.03□□□□□ -2.09
SCN4AP35499 PIGFP3-201ENST00000441918 722 ntBASIC2.03□□□□□ -2.09
SCN4AP35499 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.03□□□□□ -2.09
SCN4AP35499 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC2.03□□□□□ -2.09
SCN4AP35499 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC2.03□□□□□ -2.09
SCN4AP35499 RNY4P37-201ENST00000516225 96 ntBASIC2.03□□□□□ -2.09
SCN4AP35499 RNU5A-4P-201ENST00000516588 111 ntBASIC2.03□□□□□ -2.09
SCN4AP35499 RNU6-528P-201ENST00000516926 100 ntBASIC2.03□□□□□ -2.09
SCN4AP35499 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC2.03□□□□□ -2.09
SCN4AP35499 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC2.03□□□□□ -2.09
SCN4AP35499 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.09
SCN4AP35499 NBEAP1-201ENST00000554452 979 ntBASIC2.03□□□□□ -2.09
SCN4AP35499 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC2.03□□□□□ -2.09
SCN4AP35499 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC2.03□□□□□ -2.09
SCN4AP35499 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.03□□□□□ -2.09
SCN4AP35499 MIR3199-1-201ENST00000582434 88 ntBASIC2.03□□□□□ -2.09
SCN4AP35499 AL450336.1-201ENST00000605180 586 ntBASIC2.03□□□□□ -2.09
SCN4AP35499 AC004067.1-201ENST00000608733 700 ntBASIC2.03□□□□□ -2.09
SCN4AP35499 AL355472.4-201ENST00000610233 626 ntBASIC2.03□□□□□ -2.09
SCN4AP35499 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC2.03□□□□□ -2.09
SCN4AP35499 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
SCN4AP35499 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.02□□□□□ -2.09
SCN4AP35499 RNU6-28P-201ENST00000362378 107 ntBASIC2.02□□□□□ -2.09
SCN4AP35499 RNU6-1155P-201ENST00000363554 107 ntBASIC2.02□□□□□ -2.09
SCN4AP35499 RNU4-92P-201ENST00000363783 136 ntBASIC2.02□□□□□ -2.09
SCN4AP35499 RNU6-1207P-201ENST00000384343 107 ntBASIC2.02□□□□□ -2.09
SCN4AP35499 RNU6-83P-201ENST00000384568 112 ntBASIC2.02□□□□□ -2.09
SCN4AP35499 AL356057.2-201ENST00000403318 432 ntBASIC2.02□□□□□ -2.09
SCN4AP35499 MTCO2P8-201ENST00000412213 658 ntBASIC2.02□□□□□ -2.09
SCN4AP35499 USP9YP33-201ENST00000412220 421 ntBASIC2.02□□□□□ -2.09
SCN4AP35499 AC092648.1-201ENST00000425870 423 ntBASIC2.02□□□□□ -2.09
SCN4AP35499 USP9YP35-201ENST00000435696 412 ntBASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms