Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC3.08□□□□□ -1.92
HOXD3P31249 AC017083.1-201ENST00000428093 483 ntBASIC3.08□□□□□ -1.92
HOXD3P31249 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC3.08□□□□□ -1.92
HOXD3P31249 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.08□□□□□ -1.92
HOXD3P31249 TBCAP1-201ENST00000436520 327 ntBASIC3.08□□□□□ -1.92
HOXD3P31249 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXD3P31249 RNU7-167P-201ENST00000459160 62 ntBASIC3.08□□□□□ -1.92
HOXD3P31249 TRBV1-201ENST00000476502 284 ntBASIC3.08□□□□□ -1.92
HOXD3P31249 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.08□□□□□ -1.92
HOXD3P31249 RN7SL271P-201ENST00000487601 295 ntBASIC3.08□□□□□ -1.92
HOXD3P31249 MTND3P25-201ENST00000509243 135 ntBASIC3.08□□□□□ -1.92
HOXD3P31249 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
HOXD3P31249 APOOP4-201ENST00000513530 597 ntBASIC3.08□□□□□ -1.92
HOXD3P31249 RN7SKP24-201ENST00000515888 284 ntBASIC3.08□□□□□ -1.92
HOXD3P31249 SNORA14.1-201ENST00000516113 141 ntBASIC3.08□□□□□ -1.92
HOXD3P31249 RNU6-559P-201ENST00000516151 98 ntBASIC3.08□□□□□ -1.92
HOXD3P31249 SCARNA15.1-201ENST00000516384 125 ntBASIC3.08□□□□□ -1.92
HOXD3P31249 RNA5SP454-201ENST00000517231 127 ntBASIC3.08□□□□□ -1.92
HOXD3P31249 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXD3P31249 COPS8P3-201ENST00000526024 482 ntBASIC3.08□□□□□ -1.92
HOXD3P31249 AC091516.1-201ENST00000549191 703 ntBASIC3.08□□□□□ -1.92
HOXD3P31249 AC004024.1-201ENST00000549244 247 ntBASIC3.08□□□□□ -1.92
HOXD3P31249 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXD3P31249 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXD3P31249 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC3.08□□□□□ -1.92
HOXD3P31249 AC002545.1-201ENST00000592511 181 ntBASIC3.08□□□□□ -1.92
HOXD3P31249 AC073539.2-201ENST00000597113 165 ntBASIC3.08□□□□□ -1.92
HOXD3P31249 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
HOXD3P31249 AL627309.6-201ENST00000606857 840 ntBASIC3.08□□□□□ -1.92
HOXD3P31249 AL022345.1-201ENST00000607292 135 ntBASIC3.08□□□□□ -1.92
HOXD3P31249 FAM157A-202ENST00000615155 405 ntBASIC3.08□□□□□ -1.92
HOXD3P31249 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.08□□□□□ -1.92
HOXD3P31249 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
HOXD3P31249 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC3.08□□□□□ -1.92
HOXD3P31249 OTUD4P1-201ENST00000237841 3067 ntBASIC3.08□□□□□ -1.92
HOXD3P31249 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
HOXD3P31249 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXD3P31249 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
HOXD3P31249 AC068254.2-201ENST00000623938 3577 ntBASIC3.07□□□□□ -1.92
HOXD3P31249 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXD3P31249 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.07□□□□□ -1.92
HOXD3P31249 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
HOXD3P31249 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXD3P31249 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
HOXD3P31249 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.07□□□□□ -1.92
HOXD3P31249 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
HOXD3P31249 Y_RNA.212-201ENST00000364177 102 ntBASIC3.07□□□□□ -1.92
HOXD3P31249 SNORD116-11-201ENST00000383882 92 ntBASIC3.07□□□□□ -1.92
HOXD3P31249 MIR30B-201ENST00000384850 88 ntBASIC3.07□□□□□ -1.92
HOXD3P31249 Y_RNA.579-201ENST00000390939 94 ntBASIC3.07□□□□□ -1.92
HOXD3P31249 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC3.07□□□□□ -1.92
HOXD3P31249 AC063979.1-201ENST00000415539 377 ntBASIC3.07□□□□□ -1.92
HOXD3P31249 NCOR1P3-201ENST00000420479 303 ntBASIC3.07□□□□□ -1.92
HOXD3P31249 AF228730.4-201ENST00000421457 183 ntBASIC3.07□□□□□ -1.92
HOXD3P31249 RPL21P109-201ENST00000422213 475 ntBASIC3.07□□□□□ -1.92
HOXD3P31249 HSPD1P21-201ENST00000436541 245 ntBASIC3.07□□□□□ -1.92
HOXD3P31249 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC3.07□□□□□ -1.92
HOXD3P31249 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXD3P31249 RPS24P13-201ENST00000442520 397 ntBASIC3.07□□□□□ -1.92
HOXD3P31249 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXD3P31249 SNORD19B-201ENST00000459623 84 ntBASIC3.07□□□□□ -1.92
HOXD3P31249 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.07□□□□□ -1.92
HOXD3P31249 AC012181.1-201ENST00000479895 423 ntBASIC3.07□□□□□ -1.92
HOXD3P31249 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXD3P31249 HMGB3P15-201ENST00000507326 574 ntBASIC3.07□□□□□ -1.92
HOXD3P31249 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXD3P31249 SNORA70.16-201ENST00000516390 95 ntBASIC3.07□□□□□ -1.92
HOXD3P31249 RNU6-1069P-201ENST00000516612 133 ntBASIC3.07□□□□□ -1.92
HOXD3P31249 SNORA25.17-201ENST00000517184 124 ntBASIC3.07□□□□□ -1.92
HOXD3P31249 RN7SKP289-201ENST00000517244 295 ntBASIC3.07□□□□□ -1.92
HOXD3P31249 IGKV2-38-201ENST00000517443 247 ntBASIC3.07□□□□□ -1.92
HOXD3P31249 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXD3P31249 IL7-206ENST00000520269 456 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXD3P31249 AP005639.2-201ENST00000527592 928 ntBASIC3.07□□□□□ -1.92
HOXD3P31249 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXD3P31249 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXD3P31249 MTCO3P23-201ENST00000561363 289 ntBASIC3.07□□□□□ -1.92
HOXD3P31249 MIR4790-201ENST00000577799 79 ntBASIC3.07□□□□□ -1.92
HOXD3P31249 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.07□□□□□ -1.92
HOXD3P31249 AC138761.3-201ENST00000579993 334 ntBASIC3.07□□□□□ -1.92
HOXD3P31249 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC3.07□□□□□ -1.92
HOXD3P31249 AC106900.2-201ENST00000604994 317 ntBASIC3.07□□□□□ -1.92
HOXD3P31249 AC084781.2-201ENST00000615568 161 ntBASIC3.07□□□□□ -1.92
HOXD3P31249 AC090132.2-201ENST00000615881 347 ntBASIC3.07□□□□□ -1.92
HOXD3P31249 AL391261.4-201ENST00000616012 481 ntBASIC3.07□□□□□ -1.92
HOXD3P31249 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.07□□□□□ -1.92
HOXD3P31249 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.07□□□□□ -1.92
HOXD3P31249 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXD3P31249 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC3.07□□□□□ -1.92
HOXD3P31249 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.07□□□□□ -1.92
HOXD3P31249 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
HOXD3P31249 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.07□□□□□ -1.92
HOXD3P31249 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
HOXD3P31249 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
HOXD3P31249 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.06□□□□□ -1.92
HOXD3P31249 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC3.06□□□□□ -1.92
HOXD3P31249 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.06□□□□□ -1.92
HOXD3P31249 SNORA63.1-201ENST00000362493 131 ntBASIC3.06□□□□□ -1.92
HOXD3P31249 RNU6-1167P-201ENST00000363227 94 ntBASIC3.06□□□□□ -1.92
HOXD3P31249 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms