Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
MSX1P28360 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
MSX1P28360 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
MSX1P28360 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
MSX1P28360 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC4.81□□□□□ -1.64
MSX1P28360 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
MSX1P28360 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
MSX1P28360 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
MSX1P28360 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
MSX1P28360 RNU6-173P-201ENST00000364215 104 ntBASIC4.81□□□□□ -1.64
MSX1P28360 RNU1-43P-201ENST00000365052 165 ntBASIC4.81□□□□□ -1.64
MSX1P28360 RNU6-1175P-201ENST00000365200 107 ntBASIC4.81□□□□□ -1.64
MSX1P28360 RNU6-1286P-201ENST00000383871 107 ntBASIC4.81□□□□□ -1.64
MSX1P28360 SNORD20-201ENST00000384550 80 ntBASIC4.81□□□□□ -1.64
MSX1P28360 U3.36-201ENST00000408418 213 ntBASIC4.81□□□□□ -1.64
MSX1P28360 AC024067.1-201ENST00000426199 223 ntBASIC4.81□□□□□ -1.64
MSX1P28360 AC079780.1-201ENST00000428259 207 ntBASIC4.81□□□□□ -1.64
MSX1P28360 AL078601.1-201ENST00000444542 271 ntBASIC4.81□□□□□ -1.64
MSX1P28360 TDGF1P1-201ENST00000445734 527 ntBASIC4.81□□□□□ -1.64
MSX1P28360 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.81□□□□□ -1.64
MSX1P28360 AC139453.3-201ENST00000493276 369 ntBASIC4.81□□□□□ -1.64
MSX1P28360 SCARNA15.2-201ENST00000516409 127 ntBASIC4.81□□□□□ -1.64
MSX1P28360 RNA5SP290-201ENST00000517133 127 ntBASIC4.81□□□□□ -1.64
MSX1P28360 RNA5SP373-201ENST00000517271 95 ntBASIC4.81□□□□□ -1.64
MSX1P28360 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC4.81□□□□□ -1.64
MSX1P28360 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC4.81□□□□□ -1.64
MSX1P28360 AL161713.1-201ENST00000555538 145 ntBASIC4.81□□□□□ -1.64
MSX1P28360 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC4.81□□□□□ -1.64
MSX1P28360 AC006001.4-201ENST00000622243 395 ntBASIC4.81□□□□□ -1.64
MSX1P28360 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
MSX1P28360 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.81□□□□□ -1.64
MSX1P28360 SCARNA15-201ENST00000607520 4325 ntBASIC4.81□□□□□ -1.64
MSX1P28360 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.81□□□□□ -1.64
MSX1P28360 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
MSX1P28360 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC4.81□□□□□ -1.64
MSX1P28360 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC4.81□□□□□ -1.64
MSX1P28360 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
MSX1P28360 RAD17P1-201ENST00000418130 2042 ntBASIC4.8□□□□□ -1.64
MSX1P28360 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC4.8□□□□□ -1.64
MSX1P28360 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
MSX1P28360 AL445487.1-201ENST00000415694 1580 ntBASIC4.8□□□□□ -1.64
MSX1P28360 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
MSX1P28360 DEFB108F-201ENST00000344638 222 ntBASIC4.8□□□□□ -1.64
MSX1P28360 RNU6-105P-201ENST00000363909 104 ntBASIC4.8□□□□□ -1.64
MSX1P28360 Y_RNA.217-201ENST00000364214 105 ntBASIC4.8□□□□□ -1.64
MSX1P28360 RNU6-658P-201ENST00000384606 106 ntBASIC4.8□□□□□ -1.64
MSX1P28360 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
MSX1P28360 RNU6ATAC21P-201ENST00000408656 126 ntBASIC4.8□□□□□ -1.64
MSX1P28360 EIF1AXP1-201ENST00000419267 435 ntBASIC4.8□□□□□ -1.64
MSX1P28360 AC006466.1-201ENST00000438721 289 ntBASIC4.8□□□□□ -1.64
MSX1P28360 snoU109.2-201ENST00000459316 135 ntBASIC4.8□□□□□ -1.64
MSX1P28360 Y_RNA.641-201ENST00000459414 105 ntBASIC4.8□□□□□ -1.64
MSX1P28360 BX284632.1-201ENST00000478218 541 ntBASIC4.8□□□□□ -1.64
MSX1P28360 RPL23AP49-201ENST00000492925 468 ntBASIC4.8□□□□□ -1.64
MSX1P28360 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.8□□□□□ -1.64
MSX1P28360 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC4.8□□□□□ -1.64
MSX1P28360 SNORA40.9-201ENST00000515895 93 ntBASIC4.8□□□□□ -1.64
MSX1P28360 RNU5F-8P-201ENST00000515941 111 ntBASIC4.8□□□□□ -1.64
MSX1P28360 RNU6-572P-201ENST00000516724 80 ntBASIC4.8□□□□□ -1.64
MSX1P28360 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC4.8□□□□□ -1.64
MSX1P28360 RN7SL290P-201ENST00000578661 300 ntBASIC4.8□□□□□ -1.64
MSX1P28360 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC4.8□□□□□ -1.64
MSX1P28360 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC4.8□□□□□ -1.64
MSX1P28360 AC005296.1-201ENST00000616145 209 ntBASIC4.8□□□□□ -1.64
MSX1P28360 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC4.8□□□□□ -1.64
MSX1P28360 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
MSX1P28360 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC4.8□□□□□ -1.64
MSX1P28360 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
MSX1P28360 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
MSX1P28360 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
MSX1P28360 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
MSX1P28360 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.79□□□□□ -1.64
MSX1P28360 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
MSX1P28360 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
MSX1P28360 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
MSX1P28360 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
MSX1P28360 AC005332.5-201ENST00000591222 2919 ntBASIC4.79□□□□□ -1.64
MSX1P28360 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
MSX1P28360 Y_RNA.215-201ENST00000364204 112 ntBASIC4.79□□□□□ -1.64
MSX1P28360 AL357139.1-201ENST00000407792 426 ntBASIC4.79□□□□□ -1.64
MSX1P28360 AC093162.1-201ENST00000419682 124 ntBASIC4.79□□□□□ -1.64
MSX1P28360 AL138785.1-201ENST00000425821 331 ntBASIC4.79□□□□□ -1.64
MSX1P28360 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC4.79□□□□□ -1.64
MSX1P28360 COX6B1P7-201ENST00000430845 235 ntBASIC4.79□□□□□ -1.64
MSX1P28360 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC4.79□□□□□ -1.64
MSX1P28360 RPS29P10-201ENST00000439197 166 ntBASIC4.79□□□□□ -1.64
MSX1P28360 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC4.79□□□□□ -1.64
MSX1P28360 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC4.79□□□□□ -1.64
MSX1P28360 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC4.79□□□□□ -1.64
MSX1P28360 ANP32BP2-201ENST00000454525 545 ntBASIC4.79□□□□□ -1.64
MSX1P28360 RNU6ATAC24P-201ENST00000516811 135 ntBASIC4.79□□□□□ -1.64
MSX1P28360 MAL2-206ENST00000522187 547 ntTSL 4 BASIC4.79□□□□□ -1.64
MSX1P28360 UBE2Q2P8-201ENST00000560644 102 ntBASIC4.79□□□□□ -1.64
MSX1P28360 KLKP1-201ENST00000595979 403 ntBASIC4.79□□□□□ -1.64
MSX1P28360 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.79□□□□□ -1.64
MSX1P28360 RPL7P50-201ENST00000600588 727 ntBASIC4.79□□□□□ -1.64
MSX1P28360 BPIFA4P-203ENST00000603168 689 ntBASIC4.79□□□□□ -1.64
MSX1P28360 AC007390.2-201ENST00000606229 3803 ntBASIC4.79□□□□□ -1.64
MSX1P28360 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
MSX1P28360 MIR6839-201ENST00000620425 113 ntBASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms