Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 AC018630.1-201ENST00000541376 925 ntBASIC3.53□□□□□ -1.84
HOXD9P28356 AC026464.5-201ENST00000562497 722 ntBASIC3.53□□□□□ -1.84
HOXD9P28356 MTCO3P13-201ENST00000577757 781 ntBASIC3.53□□□□□ -1.84
HOXD9P28356 MIR6130-201ENST00000619419 109 ntBASIC3.53□□□□□ -1.84
HOXD9P28356 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXD9P28356 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.53□□□□□ -1.84
HOXD9P28356 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXD9P28356 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.53□□□□□ -1.84
HOXD9P28356 EXOC5P1-201ENST00000510543 1969 ntBASIC3.52□□□□□ -1.85
HOXD9P28356 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.52□□□□□ -1.85
HOXD9P28356 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
HOXD9P28356 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
HOXD9P28356 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXD9P28356 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.52□□□□□ -1.85
HOXD9P28356 Y_RNA.301-201ENST00000364990 103 ntBASIC3.52□□□□□ -1.85
HOXD9P28356 SNORD115-7-201ENST00000365306 82 ntBASIC3.52□□□□□ -1.85
HOXD9P28356 RNU6-61P-201ENST00000365528 109 ntBASIC3.52□□□□□ -1.85
HOXD9P28356 Y_RNA.384-201ENST00000383909 102 ntBASIC3.52□□□□□ -1.85
HOXD9P28356 Y_RNA.530-201ENST00000384587 101 ntBASIC3.52□□□□□ -1.85
HOXD9P28356 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
HOXD9P28356 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXD9P28356 RNU4-65P-201ENST00000410473 140 ntBASIC3.52□□□□□ -1.85
HOXD9P28356 AC114491.1-201ENST00000416095 246 ntBASIC3.52□□□□□ -1.85
HOXD9P28356 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXD9P28356 AF228730.4-201ENST00000421457 183 ntBASIC3.52□□□□□ -1.85
HOXD9P28356 BEND7P1-201ENST00000422058 457 ntBASIC3.52□□□□□ -1.85
HOXD9P28356 AC024082.2-201ENST00000434771 238 ntBASIC3.52□□□□□ -1.85
HOXD9P28356 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC3.52□□□□□ -1.85
HOXD9P28356 Y_RNA.632-201ENST00000459189 102 ntBASIC3.52□□□□□ -1.85
HOXD9P28356 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXD9P28356 RPS4XP13-201ENST00000483219 789 ntBASIC3.52□□□□□ -1.85
HOXD9P28356 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.52□□□□□ -1.85
HOXD9P28356 RPS15AP36-201ENST00000492022 382 ntBASIC3.52□□□□□ -1.85
HOXD9P28356 KLHL2P1-201ENST00000508691 521 ntBASIC3.52□□□□□ -1.85
HOXD9P28356 FCF1P8-201ENST00000510322 597 ntBASIC3.52□□□□□ -1.85
HOXD9P28356 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXD9P28356 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXD9P28356 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.52□□□□□ -1.85
HOXD9P28356 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXD9P28356 MIR8058-201ENST00000615737 89 ntBASIC3.52□□□□□ -1.85
HOXD9P28356 AC025034.2-201ENST00000623264 286 ntBASIC3.52□□□□□ -1.85
HOXD9P28356 U6.114-201ENST00000636407 96 ntBASIC3.52□□□□□ -1.85
HOXD9P28356 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.52□□□□□ -1.85
HOXD9P28356 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXD9P28356 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXD9P28356 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXD9P28356 AC073346.2-201ENST00000624724 2058 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXD9P28356 AC121333.1-201ENST00000567488 2709 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXD9P28356 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
HOXD9P28356 AC032011.1-201ENST00000611703 1549 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXD9P28356 Y_RNA.167-201ENST00000363735 109 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 Y_RNA.373-201ENST00000365600 103 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXD9P28356 Y_RNA.387-201ENST00000383918 102 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 SNORA9-201ENST00000384215 133 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 SNORA24.1-201ENST00000384401 135 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 RNA5SP129-201ENST00000410276 118 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 RNU6-387P-201ENST00000411331 105 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXD9P28356 MTCO2P12-201ENST00000427426 682 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 RPL7L1P10-201ENST00000427790 463 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 AC236972.2-201ENST00000434979 310 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC3.51□□□□□ -1.85
HOXD9P28356 NDUFA5P4-201ENST00000436704 385 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXD9P28356 HMGB1P12-201ENST00000438594 598 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXD9P28356 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC3.51□□□□□ -1.85
HOXD9P28356 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.51□□□□□ -1.85
HOXD9P28356 HMGN2P7-201ENST00000456186 273 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 PPP1R2P5-201ENST00000457256 603 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXD9P28356 AL162395.1-201ENST00000457882 422 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXD9P28356 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXD9P28356 RPL21P104-201ENST00000464143 478 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.51□□□□□ -1.85
HOXD9P28356 RPL21P13-201ENST00000488305 481 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 MTCO1P29-201ENST00000496868 288 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 MLLT10P2-201ENST00000506434 249 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXD9P28356 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXD9P28356 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXD9P28356 MTND4P7-201ENST00000523876 130 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXD9P28356 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXD9P28356 AL137161.1-201ENST00000532231 390 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXD9P28356 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXD9P28356 AL118558.2-201ENST00000556294 238 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXD9P28356 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXD9P28356 TUG1_2.1-201ENST00000614234 87 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 SNHG22-203ENST00000617833 660 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 RMST_9.1-201ENST00000619945 193 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXD9P28356 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 118.6 ms