Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RNU7-59P-201ENST00000459101 61 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC2.73□□□□□ -1.97
HOXD4P09016 RNU6-506P-201ENST00000516553 94 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 RNU6-1220P-201ENST00000517126 108 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 RNU6-711P-201ENST00000517255 106 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC2.73□□□□□ -1.97
HOXD4P09016 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC2.73□□□□□ -1.97
HOXD4P09016 AC103783.1-201ENST00000520506 373 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 DEFB108D-201ENST00000527787 222 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 DEFB108A-201ENST00000530110 222 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
HOXD4P09016 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC2.73□□□□□ -1.97
HOXD4P09016 AC087883.1-201ENST00000551882 391 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 AC125611.2-201ENST00000551907 647 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC2.73□□□□□ -1.97
HOXD4P09016 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.73□□□□□ -1.97
HOXD4P09016 MIR3162-201ENST00000581818 82 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 ELOCP29-201ENST00000588193 334 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 AC106900.2-201ENST00000604994 317 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 AP000860.1-201ENST00000605250 559 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 MIR98-201ENST00000606724 119 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 AC116312.1-201ENST00000606841 314 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 AC126118.1-201ENST00000607744 628 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 AF250324.2-201ENST00000608299 610 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 AL161734.1-201ENST00000609720 557 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 MIR6076-201ENST00000617521 113 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 AC006338.1-201ENST00000618453 749 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 AL158209.2-201ENST00000619266 216 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 AL136313.1-201ENST00000624804 202 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 AC009487.2-201ENST00000420969 6821 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
HOXD4P09016 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
HOXD4P09016 AC009812.4-201ENST00000569134 1805 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
HOXD4P09016 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC2.72□□□□□ -1.97
HOXD4P09016 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.72□□□□□ -1.97
HOXD4P09016 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
HOXD4P09016 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC2.72□□□□□ -1.97
HOXD4P09016 RNU5E-8P-201ENST00000363502 116 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 RNU6-432P-201ENST00000384196 109 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 SNORA1.3-201ENST00000384676 136 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 RNU6-754P-201ENST00000391166 107 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
HOXD4P09016 RPL21P75-201ENST00000396599 483 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 AC110754.1-201ENST00000399740 601 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 RPL21P28-201ENST00000401418 483 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 AL592114.1-201ENST00000403842 483 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 FAT1P1-201ENST00000406588 507 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 RNU2-43P-201ENST00000410306 190 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 RN7SKP284-201ENST00000411002 343 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 FCF1P9-201ENST00000412546 282 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 ELOCP4-201ENST00000420090 333 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC2.72□□□□□ -1.97
HOXD4P09016 MTATP6P4-201ENST00000427725 675 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 AC133104.1-201ENST00000429100 218 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC2.72□□□□□ -1.97
HOXD4P09016 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
HOXD4P09016 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC2.72□□□□□ -1.97
HOXD4P09016 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
HOXD4P09016 AC108059.3-201ENST00000456388 214 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC2.72□□□□□ -1.97
HOXD4P09016 RPL21P39-201ENST00000463605 483 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 RPL21P93-201ENST00000480465 489 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 AP004217.1-201ENST00000480579 346 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 AC233702.1-201ENST00000482905 502 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 AC087190.1-201ENST00000484462 480 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 AC093591.1-201ENST00000491435 481 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 RPL21P16-201ENST00000495531 483 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 AL117351.2-201ENST00000513571 157 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 RNA5SP356-201ENST00000515972 94 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 SNORA31.1-201ENST00000515993 133 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 SNORA31.5-201ENST00000516190 133 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC2.72□□□□□ -1.97
HOXD4P09016 AC022616.3-201ENST00000523940 148 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 FAM60DP-201ENST00000524174 632 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 AC005832.2-201ENST00000538921 1430 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.72□□□□□ -1.97
HOXD4P09016 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC2.72□□□□□ -1.97
HOXD4P09016 TPRKBP2-201ENST00000565969 475 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 MIR3167-201ENST00000579623 85 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 AP000787.2-201ENST00000604432 568 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 AP002826.1-201ENST00000608835 315 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 AL450472.3-201ENST00000615578 367 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 MIR6130-201ENST00000619419 109 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 AC019226.1-201ENST00000625666 515 ntBASIC2.72□□□□□ -1.97
HOXD4P09016 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.72□□□□□ -1.97
HOXD4P09016 DEFB108F-201ENST00000344638 222 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 MIR449A-201ENST00000362113 91 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 RNU6-181P-201ENST00000363225 107 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 RNA5SP126-201ENST00000365092 109 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.71□□□□□ -1.98
HOXD4P09016 SNORA20.2-201ENST00000383922 131 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 SNORA54-201ENST00000384281 123 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 RPS4XP3-201ENST00000398541 413 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 MIR548F1-201ENST00000408667 84 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 SNORD88.1-201ENST00000408684 91 ntBASIC2.71□□□□□ -1.98
HOXD4P09016 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.71□□□□□ -1.98
HOXD4P09016 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC2.71□□□□□ -1.98
HOXD4P09016 MTCO3P30-201ENST00000426425 670 ntBASIC2.71□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 115.2 ms