Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC0.35□□□□□ -2.35
APOBP04114 TPTE2P6-202ENST00000445572 1007 ntBASIC0.35□□□□□ -2.35
APOBP04114 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC0.35□□□□□ -2.35
APOBP04114 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC0.35□□□□□ -2.35
APOBP04114 AC025165.5-201ENST00000602802 578 ntBASIC0.35□□□□□ -2.35
APOBP04114 CYP2C61P-201ENST00000604072 290 ntBASIC0.35□□□□□ -2.35
APOBP04114 RNU6-43P-201ENST00000384302 107 ntBASIC0.35□□□□□ -2.35
APOBP04114 RPL21P24-201ENST00000413752 448 ntBASIC0.35□□□□□ -2.35
APOBP04114 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC0.35□□□□□ -2.35
APOBP04114 BLNK-209ENST00000495266 440 ntTSL 5 BASIC0.35□□□□□ -2.35
APOBP04114 COL6A4P2-205ENST00000509855 506 ntBASIC0.35□□□□□ -2.35
APOBP04114 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC0.35□□□□□ -2.35
APOBP04114 LINC02211-204ENST00000642024 1070 ntBASIC0.35□□□□□ -2.35
APOBP04114 TRAPPC2P4-201ENST00000421750 331 ntBASIC0.34□□□□□ -2.35
APOBP04114 RPS20P20-201ENST00000460498 340 ntBASIC0.34□□□□□ -2.35
APOBP04114 AC078857.1-201ENST00000469870 667 ntBASIC0.34□□□□□ -2.35
APOBP04114 NDUFB4P2-201ENST00000509515 391 ntBASIC0.34□□□□□ -2.35
APOBP04114 AC104108.1-201ENST00000509930 412 ntBASIC0.34□□□□□ -2.35
APOBP04114 SCARNA1-201ENST00000517138 166 ntBASIC0.34□□□□□ -2.35
APOBP04114 MTCYBP41-201ENST00000528913 1123 ntBASIC0.34□□□□□ -2.35
APOBP04114 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC0.34□□□□□ -2.35
APOBP04114 FAM60BP-201ENST00000578364 658 ntBASIC0.34□□□□□ -2.35
APOBP04114 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC0.34□□□□□ -2.35
APOBP04114 LAMTOR3P1-201ENST00000428620 370 ntBASIC0.34□□□□□ -2.36
APOBP04114 AC055731.1-201ENST00000474387 401 ntBASIC0.34□□□□□ -2.36
APOBP04114 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC0.34□□□□□ -2.36
APOBP04114 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC0.34□□□□□ -2.36
APOBP04114 EIF4A1P12-201ENST00000551910 141 ntBASIC0.34□□□□□ -2.36
APOBP04114 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC0.34□□□□□ -2.36
APOBP04114 AL590282.1-201ENST00000610379 1136 ntBASIC0.34□□□□□ -2.36
APOBP04114 AC003001.2-201ENST00000616294 831 ntBASIC0.34□□□□□ -2.36
APOBP04114 AC009812.4-201ENST00000569134 1805 ntBASIC0.34□□□□□ -2.36
APOBP04114 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC0.34□□□□□ -2.36
APOBP04114 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC0.34□□□□□ -2.36
APOBP04114 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC0.34□□□□□ -2.36
APOBP04114 MTND4LP13-201ENST00000425022 298 ntBASIC0.34□□□□□ -2.36
APOBP04114 AC023050.1-201ENST00000498198 304 ntBASIC0.34□□□□□ -2.36
APOBP04114 MIR4529-201ENST00000578110 78 ntBASIC0.34□□□□□ -2.36
APOBP04114 MIR3616-201ENST00000584070 92 ntBASIC0.34□□□□□ -2.36
APOBP04114 AC021749.1-201ENST00000604322 607 ntBASIC0.34□□□□□ -2.36
APOBP04114 AC060773.1-201ENST00000421698 310 ntBASIC0.33□□□□□ -2.36
APOBP04114 C1DP3-201ENST00000455013 423 ntBASIC0.33□□□□□ -2.36
APOBP04114 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC0.33□□□□□ -2.36
APOBP04114 AC023932.2-201ENST00000603176 175 ntBASIC0.33□□□□□ -2.36
APOBP04114 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC0.33□□□□□ -2.36
APOBP04114 FTH1P15-201ENST00000406984 280 ntBASIC0.33□□□□□ -2.36
APOBP04114 Y_RNA.610-201ENST00000410681 103 ntBASIC0.33□□□□□ -2.36
APOBP04114 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC0.33□□□□□ -2.36
APOBP04114 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
APOBP04114 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
APOBP04114 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
APOBP04114 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC0.33□□□□□ -2.36
APOBP04114 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
APOBP04114 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC0.33□□□□□ -2.36
APOBP04114 AL160236.1-201ENST00000556317 195 ntBASIC0.33□□□□□ -2.36
APOBP04114 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC0.33□□□□□ -2.36
APOBP04114 NUTF2P8-201ENST00000604593 363 ntBASIC0.33□□□□□ -2.36
APOBP04114 SNORD14A-201ENST00000606526 91 ntBASIC0.33□□□□□ -2.36
APOBP04114 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
APOBP04114 AL356131.1-201ENST00000405826 414 ntBASIC0.33□□□□□ -2.36
APOBP04114 RN7SKP61-201ENST00000410642 295 ntBASIC0.33□□□□□ -2.36
APOBP04114 RNA5SP450-201ENST00000411206 102 ntBASIC0.33□□□□□ -2.36
APOBP04114 UBE2V2P3-201ENST00000433562 437 ntBASIC0.33□□□□□ -2.36
APOBP04114 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC0.33□□□□□ -2.36
APOBP04114 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC0.33□□□□□ -2.36
APOBP04114 AC112518.2-201ENST00000508565 425 ntBASIC0.33□□□□□ -2.36
APOBP04114 MIR4658-201ENST00000584344 65 ntBASIC0.33□□□□□ -2.36
APOBP04114 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC0.33□□□□□ -2.36
APOBP04114 MIR6076-201ENST00000617521 113 ntBASIC0.33□□□□□ -2.36
APOBP04114 AC243829.3-201ENST00000622177 108 ntBASIC0.33□□□□□ -2.36
APOBP04114 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC0.33□□□□□ -2.36
APOBP04114 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
APOBP04114 MRPL35P3-201ENST00000421557 364 ntBASIC0.33□□□□□ -2.36
APOBP04114 RNF2P1-201ENST00000442955 1010 ntBASIC0.33□□□□□ -2.36
APOBP04114 AC079448.1-201ENST00000449377 373 ntBASIC0.33□□□□□ -2.36
APOBP04114 NCOR1P1-202ENST00000486162 291 ntBASIC0.33□□□□□ -2.36
APOBP04114 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC0.33□□□□□ -2.36
APOBP04114 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC0.33□□□□□ -2.36
APOBP04114 BTF3L4P2-201ENST00000392798 346 ntBASIC0.32□□□□□ -2.36
APOBP04114 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC0.32□□□□□ -2.36
APOBP04114 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC0.32□□□□□ -2.36
APOBP04114 AL161788.1-201ENST00000441805 169 ntBASIC0.32□□□□□ -2.36
APOBP04114 RPL30P11-201ENST00000495304 339 ntBASIC0.32□□□□□ -2.36
APOBP04114 AC109927.2-201ENST00000506416 303 ntBASIC0.32□□□□□ -2.36
APOBP04114 AC103851.1-201ENST00000506833 274 ntBASIC0.32□□□□□ -2.36
APOBP04114 RNU6-758P-201ENST00000516292 89 ntBASIC0.32□□□□□ -2.36
APOBP04114 HMGB1P46-201ENST00000520062 610 ntBASIC0.32□□□□□ -2.36
APOBP04114 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC0.32□□□□□ -2.36
APOBP04114 AP003327.1-201ENST00000529684 127 ntBASIC0.32□□□□□ -2.36
APOBP04114 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC0.32□□□□□ -2.36
APOBP04114 AC100821.1-201ENST00000523153 2479 ntBASIC0.32□□□□□ -2.36
APOBP04114 MIR1250-201ENST00000408098 113 ntBASIC0.32□□□□□ -2.36
APOBP04114 OR9R1P-201ENST00000412200 877 ntBASIC0.32□□□□□ -2.36
APOBP04114 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC0.32□□□□□ -2.36
APOBP04114 RNU7-157P-201ENST00000459600 66 ntBASIC0.32□□□□□ -2.36
APOBP04114 AC010301.1-201ENST00000473936 355 ntBASIC0.32□□□□□ -2.36
APOBP04114 HMGN2P9-201ENST00000476875 229 ntBASIC0.32□□□□□ -2.36
APOBP04114 BX322635.1-201ENST00000605804 496 ntBASIC0.32□□□□□ -2.36
APOBP04114 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC0.32□□□□□ -2.36
APOBP04114 RNU6-193P-201ENST00000410977 107 ntBASIC0.32□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms