Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
HOXC11O43248 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXC11O43248 MIR1-2-201ENST00000384961 85 ntBASIC3.37□□□□□ -1.87
HOXC11O43248 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
HOXC11O43248 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.37□□□□□ -1.87
HOXC11O43248 RNA5SP293-201ENST00000410527 113 ntBASIC3.37□□□□□ -1.87
HOXC11O43248 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXC11O43248 AC126124.2-201ENST00000413542 321 ntBASIC3.37□□□□□ -1.87
HOXC11O43248 RPL26P27-201ENST00000414397 437 ntBASIC3.37□□□□□ -1.87
HOXC11O43248 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXC11O43248 ATG3P1-201ENST00000419507 911 ntBASIC3.37□□□□□ -1.87
HOXC11O43248 SDCBPP3-201ENST00000419629 891 ntBASIC3.37□□□□□ -1.87
HOXC11O43248 CALM2P2-201ENST00000428512 440 ntBASIC3.37□□□□□ -1.87
HOXC11O43248 USP9YP14-201ENST00000430663 563 ntBASIC3.37□□□□□ -1.87
HOXC11O43248 MTCO2P11-201ENST00000431069 680 ntBASIC3.37□□□□□ -1.87
HOXC11O43248 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.37□□□□□ -1.87
HOXC11O43248 AC010401.1-201ENST00000463867 348 ntBASIC3.37□□□□□ -1.87
HOXC11O43248 RPL27AP5-201ENST00000469428 449 ntBASIC3.37□□□□□ -1.87
HOXC11O43248 AC128713.1-201ENST00000471495 306 ntBASIC3.37□□□□□ -1.87
HOXC11O43248 AC092185.1-201ENST00000491371 97 ntBASIC3.37□□□□□ -1.87
HOXC11O43248 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXC11O43248 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXC11O43248 RNU6-123P-201ENST00000516163 102 ntBASIC3.37□□□□□ -1.87
HOXC11O43248 RNU1-103P-201ENST00000516502 125 ntBASIC3.37□□□□□ -1.87
HOXC11O43248 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.37□□□□□ -1.87
HOXC11O43248 AC107934.2-201ENST00000518653 310 ntBASIC3.37□□□□□ -1.87
HOXC11O43248 OR5AL2P-201ENST00000532185 920 ntBASIC3.37□□□□□ -1.87
HOXC11O43248 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC3.37□□□□□ -1.87
HOXC11O43248 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXC11O43248 AC024619.4-201ENST00000580924 316 ntBASIC3.37□□□□□ -1.87
HOXC11O43248 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXC11O43248 HMGN2P15-201ENST00000585707 270 ntBASIC3.37□□□□□ -1.87
HOXC11O43248 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC3.37□□□□□ -1.87
HOXC11O43248 AC004832.5-201ENST00000608677 401 ntBASIC3.37□□□□□ -1.87
HOXC11O43248 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
HOXC11O43248 SNORD39.4-201ENST00000620099 78 ntBASIC3.37□□□□□ -1.87
HOXC11O43248 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
HOXC11O43248 AL157786.1-207ENST00000627771 695 ntBASIC3.37□□□□□ -1.87
HOXC11O43248 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
HOXC11O43248 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXC11O43248 AC103710.2-202ENST00000641454 2853 ntBASIC3.36□□□□□ -1.87
HOXC11O43248 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXC11O43248 RNU6-61P-201ENST00000365528 109 ntBASIC3.36□□□□□ -1.87
HOXC11O43248 RNU1-73P-201ENST00000383971 164 ntBASIC3.36□□□□□ -1.87
HOXC11O43248 RNU6-74P-201ENST00000384235 107 ntBASIC3.36□□□□□ -1.87
HOXC11O43248 Y_RNA.534-201ENST00000384599 112 ntBASIC3.36□□□□□ -1.87
HOXC11O43248 MIR454-201ENST00000390180 115 ntBASIC3.36□□□□□ -1.87
HOXC11O43248 MIR767-201ENST00000390228 109 ntBASIC3.36□□□□□ -1.87
HOXC11O43248 AL136116.1-201ENST00000403591 381 ntBASIC3.36□□□□□ -1.87
HOXC11O43248 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXC11O43248 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXC11O43248 MTCO3P41-201ENST00000414801 328 ntBASIC3.36□□□□□ -1.87
HOXC11O43248 HMGB1P9-201ENST00000429856 646 ntBASIC3.36□□□□□ -1.87
HOXC11O43248 AL353705.1-201ENST00000433468 480 ntBASIC3.36□□□□□ -1.87
HOXC11O43248 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXC11O43248 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXC11O43248 AC126182.1-201ENST00000478134 357 ntBASIC3.36□□□□□ -1.87
HOXC11O43248 RPS4XP22-201ENST00000480755 780 ntBASIC3.36□□□□□ -1.87
HOXC11O43248 FCF1P3-201ENST00000496394 590 ntBASIC3.36□□□□□ -1.87
HOXC11O43248 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXC11O43248 AC109927.2-201ENST00000506416 303 ntBASIC3.36□□□□□ -1.87
HOXC11O43248 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXC11O43248 RNU6-1315P-201ENST00000517187 99 ntBASIC3.36□□□□□ -1.87
HOXC11O43248 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC3.36□□□□□ -1.87
HOXC11O43248 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXC11O43248 AC009063.1-201ENST00000563342 702 ntBASIC3.36□□□□□ -1.87
HOXC11O43248 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXC11O43248 AL670379.4-201ENST00000605279 254 ntBASIC3.36□□□□□ -1.87
HOXC11O43248 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXC11O43248 AC093648.1-201ENST00000623546 606 ntBASIC3.36□□□□□ -1.87
HOXC11O43248 SEPT14P19-203ENST00000633205 211 ntBASIC3.36□□□□□ -1.87
HOXC11O43248 AC008669.1-201ENST00000565823 2178 ntBASIC3.36□□□□□ -1.87
HOXC11O43248 GABRG2-229ENST00000641017 3628 ntBASIC3.36□□□□□ -1.87
HOXC11O43248 AL353743.1-202ENST00000431724 1695 ntBASIC3.36□□□□□ -1.87
HOXC11O43248 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.36□□□□□ -1.87
HOXC11O43248 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.36□□□□□ -1.87
HOXC11O43248 MTND5P27-201ENST00000428871 1720 ntBASIC3.36□□□□□ -1.87
HOXC11O43248 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.35□□□□□ -1.87
HOXC11O43248 RNU1-70P-201ENST00000362618 164 ntBASIC3.35□□□□□ -1.87
HOXC11O43248 SNORA62.1-201ENST00000364287 154 ntBASIC3.35□□□□□ -1.87
HOXC11O43248 RNU6-259P-201ENST00000383999 107 ntBASIC3.35□□□□□ -1.87
HOXC11O43248 RNU2-66P-201ENST00000410650 161 ntBASIC3.35□□□□□ -1.87
HOXC11O43248 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HOXC11O43248 DLGAP5P1-201ENST00000430307 464 ntBASIC3.35□□□□□ -1.87
HOXC11O43248 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC3.35□□□□□ -1.87
HOXC11O43248 BX679664.1-201ENST00000434429 253 ntBASIC3.35□□□□□ -1.87
HOXC11O43248 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC3.35□□□□□ -1.87
HOXC11O43248 AL671855.1-201ENST00000446875 1203 ntBASIC3.35□□□□□ -1.87
HOXC11O43248 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC3.35□□□□□ -1.87
HOXC11O43248 RNU7-182P-201ENST00000459009 62 ntBASIC3.35□□□□□ -1.87
HOXC11O43248 RPS29P12-201ENST00000460178 152 ntBASIC3.35□□□□□ -1.87
HOXC11O43248 RPL36AP51-201ENST00000487216 318 ntBASIC3.35□□□□□ -1.87
HOXC11O43248 AC006445.1-201ENST00000491925 405 ntBASIC3.35□□□□□ -1.87
HOXC11O43248 AC139453.3-201ENST00000493276 369 ntBASIC3.35□□□□□ -1.87
HOXC11O43248 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.35□□□□□ -1.87
HOXC11O43248 HMGB1P29-201ENST00000505659 499 ntBASIC3.35□□□□□ -1.87
HOXC11O43248 RN7SKP282-201ENST00000516824 299 ntBASIC3.35□□□□□ -1.87
HOXC11O43248 AP003122.3-201ENST00000526316 255 ntBASIC3.35□□□□□ -1.87
HOXC11O43248 AC084851.1-201ENST00000529105 249 ntBASIC3.35□□□□□ -1.87
HOXC11O43248 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms