Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AC087369.1-201ENST00000520775 996 ntBASIC4.11□□□□□ -1.75
CBX4O00257 IGKV2D-19-201ENST00000523346 262 ntBASIC4.11□□□□□ -1.75
CBX4O00257 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC4.11□□□□□ -1.75
CBX4O00257 AC069240.1-201ENST00000548774 375 ntBASIC4.11□□□□□ -1.75
CBX4O00257 IMMP1LP2-201ENST00000552954 492 ntBASIC4.11□□□□□ -1.75
CBX4O00257 AC120057.2-201ENST00000571520 271 ntBASIC4.11□□□□□ -1.75
CBX4O00257 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC4.11□□□□□ -1.75
CBX4O00257 AL606490.9-201ENST00000603331 271 ntBASIC4.11□□□□□ -1.75
CBX4O00257 AL670379.10-201ENST00000604330 253 ntBASIC4.11□□□□□ -1.75
CBX4O00257 AL670379.9-201ENST00000605428 253 ntBASIC4.11□□□□□ -1.75
CBX4O00257 AL355365.1-201ENST00000616480 294 ntBASIC4.11□□□□□ -1.75
CBX4O00257 MIR6500-201ENST00000622700 86 ntBASIC4.11□□□□□ -1.75
CBX4O00257 CR392039.5-201ENST00000623201 510 ntBASIC4.11□□□□□ -1.75
CBX4O00257 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.11□□□□□ -1.75
CBX4O00257 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.11□□□□□ -1.75
CBX4O00257 TEX41-300ENST00000631048 69 ntTSL 5 BASIC4.11□□□□□ -1.75
CBX4O00257 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
CBX4O00257 AC011266.1-201ENST00000624119 3569 ntBASIC4.11□□□□□ -1.75
CBX4O00257 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC4.11□□□□□ -1.75
CBX4O00257 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.11□□□□□ -1.75
CBX4O00257 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
CBX4O00257 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CBX4O00257 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
CBX4O00257 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CBX4O00257 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CBX4O00257 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CBX4O00257 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
CBX4O00257 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CBX4O00257 RNA5SP124-201ENST00000362739 110 ntBASIC4.1□□□□□ -1.75
CBX4O00257 Y_RNA.333-201ENST00000365274 102 ntBASIC4.1□□□□□ -1.75
CBX4O00257 RHOT1P2-201ENST00000366423 333 ntBASIC4.1□□□□□ -1.75
CBX4O00257 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
CBX4O00257 MIR708-201ENST00000390708 88 ntBASIC4.1□□□□□ -1.75
CBX4O00257 SNORA11.1-201ENST00000408133 129 ntBASIC4.1□□□□□ -1.75
CBX4O00257 RNU6ATAC-201ENST00000408749 126 ntBASIC4.1□□□□□ -1.75
CBX4O00257 RNA5SP104-201ENST00000410989 118 ntBASIC4.1□□□□□ -1.75
CBX4O00257 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC4.1□□□□□ -1.75
CBX4O00257 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC4.1□□□□□ -1.75
CBX4O00257 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC4.1□□□□□ -1.75
CBX4O00257 AC005534.2-201ENST00000431047 433 ntBASIC4.1□□□□□ -1.75
CBX4O00257 AC007389.2-201ENST00000434630 306 ntBASIC4.1□□□□□ -1.75
CBX4O00257 TBCAP1-201ENST00000436520 327 ntBASIC4.1□□□□□ -1.75
CBX4O00257 RANP8-201ENST00000444720 713 ntBASIC4.1□□□□□ -1.75
CBX4O00257 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.1□□□□□ -1.75
CBX4O00257 SNRPGP5-201ENST00000456003 220 ntBASIC4.1□□□□□ -1.75
CBX4O00257 AC022493.1-201ENST00000492984 337 ntBASIC4.1□□□□□ -1.75
CBX4O00257 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC4.1□□□□□ -1.75
CBX4O00257 RNU6-1170P-201ENST00000515974 106 ntBASIC4.1□□□□□ -1.75
CBX4O00257 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC4.1□□□□□ -1.75
CBX4O00257 AC025423.5-201ENST00000550230 219 ntBASIC4.1□□□□□ -1.75
CBX4O00257 AC026371.1-201ENST00000551867 419 ntBASIC4.1□□□□□ -1.75
CBX4O00257 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.1□□□□□ -1.75
CBX4O00257 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC4.1□□□□□ -1.75
CBX4O00257 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC4.1□□□□□ -1.75
CBX4O00257 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC4.1□□□□□ -1.75
CBX4O00257 NUTF2P8-201ENST00000604593 363 ntBASIC4.1□□□□□ -1.75
CBX4O00257 ATP5A1P2-202ENST00000616464 443 ntBASIC4.1□□□□□ -1.75
CBX4O00257 RMST_9.1-201ENST00000619945 193 ntBASIC4.1□□□□□ -1.75
CBX4O00257 MIR6075-201ENST00000620782 95 ntBASIC4.1□□□□□ -1.75
CBX4O00257 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC4.1□□□□□ -1.75
CBX4O00257 PSMD5-AS1-215ENST00000640622 205 ntBASIC4.1□□□□□ -1.75
CBX4O00257 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CBX4O00257 AC005183.1-201ENST00000603687 1979 ntBASIC4.1□□□□□ -1.75
CBX4O00257 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CBX4O00257 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CBX4O00257 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.1□□□□□ -1.75
CBX4O00257 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CBX4O00257 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
CBX4O00257 AC016588.2-201ENST00000632484 3021 ntBASIC4.09□□□□□ -1.75
CBX4O00257 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CBX4O00257 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.09□□□□□ -1.75
CBX4O00257 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC4.09□□□□□ -1.75
CBX4O00257 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.09□□□□□ -1.75
CBX4O00257 AL359693.1-201ENST00000614959 2407 ntBASIC4.09□□□□□ -1.75
CBX4O00257 MIR412-201ENST00000362142 91 ntBASIC4.09□□□□□ -1.75
CBX4O00257 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
CBX4O00257 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC4.09□□□□□ -1.75
CBX4O00257 RNU6-1227P-201ENST00000383981 107 ntBASIC4.09□□□□□ -1.75
CBX4O00257 Y_RNA.482-201ENST00000384377 111 ntBASIC4.09□□□□□ -1.75
CBX4O00257 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
CBX4O00257 AL391417.1-201ENST00000404100 426 ntBASIC4.09□□□□□ -1.75
CBX4O00257 RNU4-14P-201ENST00000410858 122 ntBASIC4.09□□□□□ -1.75
CBX4O00257 RNU6-370P-201ENST00000411008 104 ntBASIC4.09□□□□□ -1.75
CBX4O00257 AL354751.2-201ENST00000415471 210 ntBASIC4.09□□□□□ -1.75
CBX4O00257 AL353748.1-201ENST00000440753 474 ntBASIC4.09□□□□□ -1.75
CBX4O00257 AC130509.1-201ENST00000464158 433 ntBASIC4.09□□□□□ -1.75
CBX4O00257 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC4.09□□□□□ -1.75
CBX4O00257 RPL30P5-201ENST00000494923 336 ntBASIC4.09□□□□□ -1.75
CBX4O00257 VWA8P1-201ENST00000510889 176 ntBASIC4.09□□□□□ -1.75
CBX4O00257 MIR892C-201ENST00000516410 77 ntBASIC4.09□□□□□ -1.75
CBX4O00257 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC4.09□□□□□ -1.75
CBX4O00257 TRAV37-201ENST00000553906 342 ntBASIC4.09□□□□□ -1.75
CBX4O00257 AC005344.1-201ENST00000613391 459 ntBASIC4.09□□□□□ -1.75
CBX4O00257 AC084781.2-201ENST00000615568 161 ntBASIC4.09□□□□□ -1.75
CBX4O00257 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC4.09□□□□□ -1.75
CBX4O00257 AC010378.1-201ENST00000619270 362 ntBASIC4.09□□□□□ -1.75
CBX4O00257 AL359757.2-201ENST00000624309 274 ntBASIC4.09□□□□□ -1.75
CBX4O00257 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.09□□□□□ -1.75
CBX4O00257 MTND4LP32-201ENST00000636111 270 ntBASIC4.09□□□□□ -1.75
CBX4O00257 AC012442.3-202ENST00000636742 206 ntBASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms