Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.89□□□□□ -1.95
PCDHGA1Q9Y5H4 MIR548AB-201ENST00000584917 84 ntBASIC2.89□□□□□ -1.95
PCDHGA1Q9Y5H4 AL627309.6-201ENST00000606857 840 ntBASIC2.89□□□□□ -1.95
PCDHGA1Q9Y5H4 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC2.89□□□□□ -1.95
PCDHGA1Q9Y5H4 MIR6715A-201ENST00000615929 79 ntBASIC2.89□□□□□ -1.95
PCDHGA1Q9Y5H4 IGHVIII-44-202ENST00000636235 289 ntBASIC2.89□□□□□ -1.95
PCDHGA1Q9Y5H4 MIR3974-201ENST00000637126 96 ntBASIC2.89□□□□□ -1.95
PCDHGA1Q9Y5H4 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.89□□□□□ -1.95
PCDHGA1Q9Y5H4 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
PCDHGA1Q9Y5H4 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
PCDHGA1Q9Y5H4 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.88□□□□□ -1.95
PCDHGA1Q9Y5H4 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.88□□□□□ -1.95
PCDHGA1Q9Y5H4 RNU6-1167P-201ENST00000363227 94 ntBASIC2.88□□□□□ -1.95
PCDHGA1Q9Y5H4 RNU6-884P-201ENST00000363889 107 ntBASIC2.88□□□□□ -1.95
PCDHGA1Q9Y5H4 RNY4P16-201ENST00000364768 94 ntBASIC2.88□□□□□ -1.95
PCDHGA1Q9Y5H4 RNU6-1180P-201ENST00000364935 107 ntBASIC2.88□□□□□ -1.95
PCDHGA1Q9Y5H4 RNU2-25P-201ENST00000411041 191 ntBASIC2.88□□□□□ -1.95
PCDHGA1Q9Y5H4 RPL19P1-201ENST00000411635 428 ntBASIC2.88□□□□□ -1.95
PCDHGA1Q9Y5H4 AC009518.2-201ENST00000418056 731 ntBASIC2.88□□□□□ -1.95
PCDHGA1Q9Y5H4 ZNF90P2-204ENST00000419323 1075 ntBASIC2.88□□□□□ -1.95
PCDHGA1Q9Y5H4 AC090960.1-201ENST00000421072 306 ntBASIC2.88□□□□□ -1.95
PCDHGA1Q9Y5H4 AC009414.1-201ENST00000427200 443 ntBASIC2.88□□□□□ -1.95
PCDHGA1Q9Y5H4 AC245166.1-201ENST00000521012 253 ntBASIC2.88□□□□□ -1.95
PCDHGA1Q9Y5H4 AP003122.4-201ENST00000530980 758 ntBASIC2.88□□□□□ -1.95
PCDHGA1Q9Y5H4 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.88□□□□□ -1.95
PCDHGA1Q9Y5H4 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.88□□□□□ -1.95
PCDHGA1Q9Y5H4 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC2.88□□□□□ -1.95
PCDHGA1Q9Y5H4 AL355598.1-201ENST00000604169 202 ntBASIC2.88□□□□□ -1.95
PCDHGA1Q9Y5H4 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC2.88□□□□□ -1.95
PCDHGA1Q9Y5H4 AC025048.6-202ENST00000627667 438 ntBASIC2.88□□□□□ -1.95
PCDHGA1Q9Y5H4 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC2.88□□□□□ -1.95
PCDHGA1Q9Y5H4 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
PCDHGA1Q9Y5H4 AC009487.2-201ENST00000420969 6821 ntBASIC2.88□□□□□ -1.95
PCDHGA1Q9Y5H4 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 MIR627-201ENST00000384979 97 ntBASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 RPL32P35-201ENST00000415214 394 ntBASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 AC096649.2-201ENST00000416186 393 ntBASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 AC087499.2-201ENST00000432861 149 ntBASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 RPS20P5-201ENST00000434808 360 ntBASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 TAF9P1-201ENST00000445421 515 ntBASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 SSXP1-201ENST00000453640 473 ntBASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 TAF9P2-201ENST00000454958 515 ntBASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 MTND1P12-201ENST00000455231 147 ntBASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 SNRPFP4-201ENST00000456366 242 ntBASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 RN7SKP40-201ENST00000517211 242 ntBASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 AP003467.2-201ENST00000520175 319 ntBASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 AC060788.1-201ENST00000521318 469 ntBASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 AP003181.2-201ENST00000528941 181 ntBASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 AC012414.6-201ENST00000568241 401 ntBASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 CLIC4P2-201ENST00000601934 717 ntBASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 RPL23AP88-201ENST00000605759 454 ntBASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 AC103710.2-201ENST00000609912 942 ntBASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 AC099654.13-201ENST00000639774 207 ntBASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.87□□□□□ -1.95
PCDHGA1Q9Y5H4 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.86□□□□□ -1.95
PCDHGA1Q9Y5H4 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
PCDHGA1Q9Y5H4 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC2.86□□□□□ -1.95
PCDHGA1Q9Y5H4 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.86□□□□□ -1.95
PCDHGA1Q9Y5H4 RNU4-1-201ENST00000363925 141 ntBASIC2.86□□□□□ -1.95
PCDHGA1Q9Y5H4 RNU4-91P-201ENST00000364778 135 ntBASIC2.86□□□□□ -1.95
PCDHGA1Q9Y5H4 AL512633.1-201ENST00000399931 655 ntBASIC2.86□□□□□ -1.95
PCDHGA1Q9Y5H4 AL356057.2-201ENST00000403318 432 ntBASIC2.86□□□□□ -1.95
PCDHGA1Q9Y5H4 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC2.86□□□□□ -1.95
PCDHGA1Q9Y5H4 SLC44A3-AS1-205ENST00000424505 612 ntBASIC2.86□□□□□ -1.95
PCDHGA1Q9Y5H4 FCF1P1-201ENST00000432690 571 ntBASIC2.86□□□□□ -1.95
PCDHGA1Q9Y5H4 PGBD4P3-201ENST00000440731 581 ntBASIC2.86□□□□□ -1.95
PCDHGA1Q9Y5H4 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC2.86□□□□□ -1.95
PCDHGA1Q9Y5H4 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.86□□□□□ -1.95
PCDHGA1Q9Y5H4 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC2.86□□□□□ -1.95
PCDHGA1Q9Y5H4 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC2.86□□□□□ -1.95
PCDHGA1Q9Y5H4 RNA5SP269-201ENST00000459032 137 ntBASIC2.86□□□□□ -1.95
PCDHGA1Q9Y5H4 SNORD97-201ENST00000459187 142 ntBASIC2.86□□□□□ -1.95
PCDHGA1Q9Y5H4 RPL36AP51-201ENST00000487216 318 ntBASIC2.86□□□□□ -1.95
PCDHGA1Q9Y5H4 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC2.86□□□□□ -1.95
PCDHGA1Q9Y5H4 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.86□□□□□ -1.95
PCDHGA1Q9Y5H4 RNA5SP217-201ENST00000515959 91 ntBASIC2.86□□□□□ -1.95
PCDHGA1Q9Y5H4 Y_RNA.688-201ENST00000516565 95 ntBASIC2.86□□□□□ -1.95
PCDHGA1Q9Y5H4 SNORA31.18-201ENST00000517043 134 ntBASIC2.86□□□□□ -1.95
PCDHGA1Q9Y5H4 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC2.86□□□□□ -1.95
PCDHGA1Q9Y5H4 RPL21P5-201ENST00000554662 472 ntBASIC2.86□□□□□ -1.95
PCDHGA1Q9Y5H4 RPS3AP4-201ENST00000555161 764 ntBASIC2.86□□□□□ -1.95
PCDHGA1Q9Y5H4 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC2.86□□□□□ -1.95
PCDHGA1Q9Y5H4 AC009977.1-201ENST00000586015 570 ntBASIC2.86□□□□□ -1.95
PCDHGA1Q9Y5H4 AL670379.6-201ENST00000603753 252 ntBASIC2.86□□□□□ -1.95
PCDHGA1Q9Y5H4 AL670379.11-201ENST00000604059 253 ntBASIC2.86□□□□□ -1.95
PCDHGA1Q9Y5H4 Z94722.1-201ENST00000604328 474 ntBASIC2.86□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms