Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 RNU6-1025P-201ENST00000410629 104 ntBASIC2.55□□□□□ -2
FOXA2Q9Y261 RNA5SP492-201ENST00000411330 114 ntBASIC2.55□□□□□ -2
FOXA2Q9Y261 NPM1P11-201ENST00000417106 855 ntBASIC2.55□□□□□ -2
FOXA2Q9Y261 AL109913.1-201ENST00000421173 514 ntBASIC2.55□□□□□ -2
FOXA2Q9Y261 AC005326.1-201ENST00000429197 123 ntBASIC2.55□□□□□ -2
FOXA2Q9Y261 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC2.55□□□□□ -2
FOXA2Q9Y261 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC2.55□□□□□ -2
FOXA2Q9Y261 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC2.55□□□□□ -2
FOXA2Q9Y261 AL445687.1-201ENST00000439946 251 ntBASIC2.55□□□□□ -2
FOXA2Q9Y261 PGBD4P3-201ENST00000440731 581 ntBASIC2.55□□□□□ -2
FOXA2Q9Y261 TEX21P-201ENST00000447107 1476 ntBASIC2.55□□□□□ -2
FOXA2Q9Y261 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC2.55□□□□□ -2
FOXA2Q9Y261 AL033528.1-201ENST00000453780 140 ntBASIC2.55□□□□□ -2
FOXA2Q9Y261 RN7SL75P-201ENST00000461926 281 ntBASIC2.55□□□□□ -2
FOXA2Q9Y261 AC107626.1-201ENST00000471084 183 ntBASIC2.55□□□□□ -2
FOXA2Q9Y261 AL358832.1-201ENST00000497800 389 ntBASIC2.55□□□□□ -2
FOXA2Q9Y261 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC2.55□□□□□ -2
FOXA2Q9Y261 AC026427.2-201ENST00000506228 536 ntBASIC2.55□□□□□ -2
FOXA2Q9Y261 AC109927.2-201ENST00000506416 303 ntBASIC2.55□□□□□ -2
FOXA2Q9Y261 RNU2-46P-201ENST00000517038 113 ntBASIC2.55□□□□□ -2
FOXA2Q9Y261 AC026407.1-201ENST00000518369 204 ntBASIC2.55□□□□□ -2
FOXA2Q9Y261 AC009902.1-201ENST00000519351 183 ntBASIC2.55□□□□□ -2
FOXA2Q9Y261 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC2.55□□□□□ -2
FOXA2Q9Y261 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC2.55□□□□□ -2
FOXA2Q9Y261 LYZ-203ENST00000549690 669 ntTSL 2 BASIC2.55□□□□□ -2
FOXA2Q9Y261 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC2.55□□□□□ -2
FOXA2Q9Y261 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.55□□□□□ -2
FOXA2Q9Y261 AL157871.3-201ENST00000557231 293 ntBASIC2.55□□□□□ -2
FOXA2Q9Y261 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC2.55□□□□□ -2
FOXA2Q9Y261 AL451064.1-201ENST00000607718 471 ntBASIC2.55□□□□□ -2
FOXA2Q9Y261 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC2.55□□□□□ -2
FOXA2Q9Y261 AC091304.9-201ENST00000612091 226 ntBASIC2.55□□□□□ -2
FOXA2Q9Y261 AL589743.7-201ENST00000612637 233 ntBASIC2.55□□□□□ -2
FOXA2Q9Y261 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
FOXA2Q9Y261 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.55□□□□□ -2
FOXA2Q9Y261 AC004777.1-201ENST00000624317 287 ntBASIC2.55□□□□□ -2
FOXA2Q9Y261 ABBA01000935.2-201ENST00000637477 838 ntBASIC2.55□□□□□ -2
FOXA2Q9Y261 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
FOXA2Q9Y261 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
FOXA2Q9Y261 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.54□□□□□ -2
FOXA2Q9Y261 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
FOXA2Q9Y261 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
FOXA2Q9Y261 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.54□□□□□ -2
FOXA2Q9Y261 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC2.54□□□□□ -2
FOXA2Q9Y261 IARS-201ENST00000375627 697 ntTSL 3 BASIC2.54□□□□□ -2
FOXA2Q9Y261 RNU6-19P-201ENST00000384718 107 ntBASIC2.54□□□□□ -2
FOXA2Q9Y261 RNVU1-14-201ENST00000384770 164 ntBASIC2.54□□□□□ -2
FOXA2Q9Y261 SLC44A3-AS1-205ENST00000424505 612 ntBASIC2.54□□□□□ -2
FOXA2Q9Y261 PTGES3P4-201ENST00000426243 356 ntBASIC2.54□□□□□ -2
FOXA2Q9Y261 MED13P1-201ENST00000428342 171 ntBASIC2.54□□□□□ -2
FOXA2Q9Y261 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC2.54□□□□□ -2
FOXA2Q9Y261 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.54□□□□□ -2
FOXA2Q9Y261 CETN4P-201ENST00000432407 469 ntBASIC2.54□□□□□ -2
FOXA2Q9Y261 AC104850.1-201ENST00000435940 476 ntBASIC2.54□□□□□ -2
FOXA2Q9Y261 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.54□□□□□ -2
FOXA2Q9Y261 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC2.54□□□□□ -2
FOXA2Q9Y261 AC092001.1-201ENST00000453012 261 ntBASIC2.54□□□□□ -2
FOXA2Q9Y261 snoU13.22-201ENST00000459428 104 ntBASIC2.54□□□□□ -2
FOXA2Q9Y261 RN7SL807P-201ENST00000470923 297 ntBASIC2.54□□□□□ -2
FOXA2Q9Y261 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.54□□□□□ -2
FOXA2Q9Y261 BET1P1-201ENST00000482276 359 ntBASIC2.54□□□□□ -2
FOXA2Q9Y261 EIF4EP3-201ENST00000498782 656 ntBASIC2.54□□□□□ -2
FOXA2Q9Y261 LAMTOR3P2-201ENST00000504479 232 ntBASIC2.54□□□□□ -2
FOXA2Q9Y261 AC117522.1-201ENST00000509821 380 ntBASIC2.54□□□□□ -2
FOXA2Q9Y261 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC2.54□□□□□ -2
FOXA2Q9Y261 Vault.3-201ENST00000516676 95 ntBASIC2.54□□□□□ -2
FOXA2Q9Y261 RPPH1-2P-201ENST00000516688 293 ntBASIC2.54□□□□□ -2
FOXA2Q9Y261 SNORA31.19-201ENST00000517079 126 ntBASIC2.54□□□□□ -2
FOXA2Q9Y261 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC2.54□□□□□ -2
FOXA2Q9Y261 AC060788.1-201ENST00000521318 469 ntBASIC2.54□□□□□ -2
FOXA2Q9Y261 OR5B19P-201ENST00000531766 928 ntBASIC2.54□□□□□ -2
FOXA2Q9Y261 ADI1P3-201ENST00000549509 470 ntBASIC2.54□□□□□ -2
FOXA2Q9Y261 AL158211.1-201ENST00000566763 763 ntBASIC2.54□□□□□ -2
FOXA2Q9Y261 AC137800.2-201ENST00000574375 120 ntBASIC2.54□□□□□ -2
FOXA2Q9Y261 MIR1273C-201ENST00000578669 77 ntBASIC2.54□□□□□ -2
FOXA2Q9Y261 MIR2682-201ENST00000580305 110 ntBASIC2.54□□□□□ -2
FOXA2Q9Y261 MIR3616-201ENST00000584070 92 ntBASIC2.54□□□□□ -2
FOXA2Q9Y261 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC2.54□□□□□ -2
FOXA2Q9Y261 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.54□□□□□ -2
FOXA2Q9Y261 AC015871.2-201ENST00000603605 948 ntBASIC2.54□□□□□ -2
FOXA2Q9Y261 AC007938.3-201ENST00000604965 623 ntBASIC2.54□□□□□ -2
FOXA2Q9Y261 AC078883.4-201ENST00000623218 367 ntBASIC2.54□□□□□ -2
FOXA2Q9Y261 AL603839.4-201ENST00000624658 1005 ntBASIC2.54□□□□□ -2
FOXA2Q9Y261 AC110994.2-201ENST00000635481 492 ntBASIC2.54□□□□□ -2
FOXA2Q9Y261 AC093831.2-201ENST00000624393 3427 ntBASIC2.54□□□□□ -2
FOXA2Q9Y261 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
FOXA2Q9Y261 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
FOXA2Q9Y261 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.54□□□□□ -2
FOXA2Q9Y261 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC2.53□□□□□ -2
FOXA2Q9Y261 AC010329.5-201ENST00000623497 2174 ntBASIC2.53□□□□□ -2
FOXA2Q9Y261 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.53□□□□□ -2
FOXA2Q9Y261 Y_RNA.33-201ENST00000362591 102 ntBASIC2.53□□□□□ -2
FOXA2Q9Y261 SNORD46.1-201ENST00000364139 104 ntBASIC2.53□□□□□ -2
FOXA2Q9Y261 MIR558-201ENST00000384920 94 ntBASIC2.53□□□□□ -2
FOXA2Q9Y261 MIR887-201ENST00000401258 79 ntBASIC2.53□□□□□ -2
FOXA2Q9Y261 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.53□□□□□ -2
FOXA2Q9Y261 RNA5SP120-201ENST00000410900 112 ntBASIC2.53□□□□□ -2
FOXA2Q9Y261 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC2.53□□□□□ -2
FOXA2Q9Y261 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.53□□□□□ -2
FOXA2Q9Y261 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 155 ms