Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AC010153.1-201ENST00000432862 727 ntBASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 RPL22P17-201ENST00000438729 315 ntBASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 AC020550.1-201ENST00000447385 163 ntBASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 AL133217.1-201ENST00000450980 425 ntBASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 BZW1P2-201ENST00000473537 826 ntBASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 AC005178.1-201ENST00000508392 440 ntBASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 AC234781.5-201ENST00000508429 271 ntBASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 AC021269.2-201ENST00000532318 330 ntBASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 MIR3146-201ENST00000580367 79 ntBASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 AC060766.3-201ENST00000591442 263 ntBASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 AC136601.2-201ENST00000604356 474 ntBASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 AC103710.1-201ENST00000610003 901 ntBASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 AL360219.1-201ENST00000610230 366 ntBASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 AC090970.3-201ENST00000612566 866 ntBASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 AC027807.2-201ENST00000616099 408 ntBASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 AC022336.2-201ENST00000568966 2538 ntBASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 XGY1-201ENST00000381172 446 ntBASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 AL356057.2-201ENST00000403318 432 ntBASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 RNU2-25P-201ENST00000411041 191 ntBASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 RPL7P37-201ENST00000425095 738 ntBASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 ZNF863P-201ENST00000426746 417 ntBASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 AL513328.1-201ENST00000446460 224 ntBASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 ART2BP-201ENST00000453501 499 ntBASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 RPL12P25-201ENST00000455592 494 ntBASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 AC108059.3-201ENST00000456388 214 ntBASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 AL139824.2-201ENST00000458731 1095 ntBASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 UBE2DNL-203ENST00000474922 222 ntBASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 MTND5P13-201ENST00000513046 1079 ntBASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 RPPH1-2P-201ENST00000516688 293 ntBASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 AC025881.1-201ENST00000518851 512 ntBASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 AP001646.1-201ENST00000527936 915 ntBASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 OR5BN1P-201ENST00000532955 829 ntBASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 ZNF519P3-201ENST00000557158 1032 ntBASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 KC877982.1-201ENST00000602313 470 ntBASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 WISP1-OT1-201ENST00000602893 642 ntBASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 AC067747.1-201ENST00000608026 250 ntBASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 AL161734.1-201ENST00000609720 557 ntBASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 AC079248.2-201ENST00000623779 326 ntBASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 AC010297.1-201ENST00000623948 149 ntBASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.74□□□□□ -1.97
VPS54Q9P1Q0 AC008669.1-201ENST00000565823 2178 ntBASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 MIR6073-201ENST00000352083 89 ntBASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 RNU1-105P-201ENST00000363470 161 ntBASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 RNY3P13-201ENST00000365542 102 ntBASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 RNU6-533P-201ENST00000384144 107 ntBASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 SNORA67.4-201ENST00000384688 142 ntBASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 AL139397.2-201ENST00000404529 772 ntBASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 RNU4-72P-201ENST00000410754 173 ntBASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 HMGN2P35-201ENST00000412164 270 ntBASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 USP9YP13-201ENST00000417797 480 ntBASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 WASF1P1-201ENST00000447560 1131 ntBASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 RN7SL636P-201ENST00000497504 294 ntBASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 RNU6-201P-201ENST00000517100 61 ntBASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 ATP5F1P5-201ENST00000526403 760 ntBASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 AL391261.3-201ENST00000557194 520 ntBASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 ROCK1P1-201ENST00000573767 549 ntBASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 AL645944.1-201ENST00000603857 493 ntBASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 FTX_3.1-201ENST00000610451 147 ntBASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 AC122133.1-201ENST00000613964 233 ntBASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 MIR7844-201ENST00000616161 122 ntBASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC2.73□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms