Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AC011276.1-201ENST00000469688 323 ntBASIC3.66□□□□□ -1.82
VSX1Q9NZR4 RN7SL303P-201ENST00000469773 251 ntBASIC3.66□□□□□ -1.82
VSX1Q9NZR4 AC027575.1-201ENST00000481064 460 ntBASIC3.66□□□□□ -1.82
VSX1Q9NZR4 RN7SL271P-201ENST00000487601 295 ntBASIC3.66□□□□□ -1.82
VSX1Q9NZR4 AL160314.1-201ENST00000490836 438 ntBASIC3.66□□□□□ -1.82
VSX1Q9NZR4 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC3.66□□□□□ -1.82
VSX1Q9NZR4 AC005921.1-201ENST00000510589 286 ntBASIC3.66□□□□□ -1.82
VSX1Q9NZR4 RNU6-273P-201ENST00000516937 96 ntBASIC3.66□□□□□ -1.82
VSX1Q9NZR4 RNA5SP291-201ENST00000517222 105 ntBASIC3.66□□□□□ -1.82
VSX1Q9NZR4 CDH12P4-201ENST00000517835 295 ntBASIC3.66□□□□□ -1.82
VSX1Q9NZR4 CDH12P3-201ENST00000517935 295 ntBASIC3.66□□□□□ -1.82
VSX1Q9NZR4 CDH12P1-201ENST00000518435 295 ntBASIC3.66□□□□□ -1.82
VSX1Q9NZR4 RNU6-323P-201ENST00000521915 107 ntBASIC3.66□□□□□ -1.82
VSX1Q9NZR4 RPL23AP87-202ENST00000573039 466 ntBASIC3.66□□□□□ -1.82
VSX1Q9NZR4 AC006504.6-201ENST00000590142 199 ntBASIC3.66□□□□□ -1.82
VSX1Q9NZR4 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.66□□□□□ -1.82
VSX1Q9NZR4 AC012119.1-201ENST00000603184 222 ntBASIC3.66□□□□□ -1.82
VSX1Q9NZR4 AL080274.1-201ENST00000605565 220 ntBASIC3.66□□□□□ -1.82
VSX1Q9NZR4 FAM157A-202ENST00000615155 405 ntBASIC3.66□□□□□ -1.82
VSX1Q9NZR4 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
VSX1Q9NZR4 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
VSX1Q9NZR4 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
VSX1Q9NZR4 USP8P1-201ENST00000494673 3183 ntBASIC3.66□□□□□ -1.82
VSX1Q9NZR4 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.65□□□□□ -1.82
VSX1Q9NZR4 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.65□□□□□ -1.83
VSX1Q9NZR4 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.65□□□□□ -1.83
VSX1Q9NZR4 SNORD3E-201ENST00000362899 217 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 RNU6-1167P-201ENST00000363227 94 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 RNA5SP189-201ENST00000364920 115 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 RNU6-395P-201ENST00000365662 106 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 SNORD116-29-201ENST00000384516 83 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 AL445189.1-201ENST00000405722 338 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 RPL5P18-201ENST00000406671 891 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 RNU6-370P-201ENST00000411008 104 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 UBE2V1P4-201ENST00000425374 344 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 SKA2P1-201ENST00000425592 390 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 COX6B1P7-201ENST00000430845 235 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 AC011742.1-201ENST00000431448 434 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.65□□□□□ -1.83
VSX1Q9NZR4 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.65□□□□□ -1.83
VSX1Q9NZR4 HMGB3P22-202ENST00000451823 572 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 ELOCP24-201ENST00000456370 334 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 RNU7-138P-201ENST00000459479 64 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 SNRPGP3-201ENST00000469405 227 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 RPL31P13-201ENST00000484151 370 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 AC090096.1-201ENST00000489168 390 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC3.65□□□□□ -1.83
VSX1Q9NZR4 RPL29P14-201ENST00000495837 428 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 RPL31P61-201ENST00000496160 376 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 UBE2CP3-201ENST00000502715 450 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.65□□□□□ -1.83
VSX1Q9NZR4 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC3.65□□□□□ -1.83
VSX1Q9NZR4 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
VSX1Q9NZR4 RNU6-1045P-201ENST00000516321 107 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 ASB8-204ENST00000536071 568 ntTSL 4 BASIC3.65□□□□□ -1.83
VSX1Q9NZR4 APOOP3-201ENST00000536787 586 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 AC026371.1-201ENST00000551867 419 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 AC020661.2-201ENST00000560114 134 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 AL670379.10-201ENST00000604330 253 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 AL670379.9-201ENST00000605428 253 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC3.65□□□□□ -1.83
VSX1Q9NZR4 MIR6820-201ENST00000611508 62 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 AL157817.1-201ENST00000614264 790 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 MIR7151-201ENST00000617477 60 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 AC112200.1-201ENST00000625015 234 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 MTND4LP32-201ENST00000636111 270 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 AL773545.4-201ENST00000637262 310 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 AL513478.4-201ENST00000641636 310 ntBASIC3.65□□□□□ -1.83
VSX1Q9NZR4 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
VSX1Q9NZR4 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
VSX1Q9NZR4 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.65□□□□□ -1.83
VSX1Q9NZR4 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.65□□□□□ -1.83
VSX1Q9NZR4 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
VSX1Q9NZR4 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
VSX1Q9NZR4 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
VSX1Q9NZR4 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.64□□□□□ -1.83
VSX1Q9NZR4 RPL32P3-201ENST00000359025 275 ntBASIC3.64□□□□□ -1.83
VSX1Q9NZR4 SNORA31-201ENST00000362607 130 ntBASIC3.64□□□□□ -1.83
VSX1Q9NZR4 Y_RNA.138-201ENST00000363462 102 ntBASIC3.64□□□□□ -1.83
VSX1Q9NZR4 RNU6-1188P-201ENST00000363795 107 ntBASIC3.64□□□□□ -1.83
VSX1Q9NZR4 Y_RNA.197-201ENST00000364004 102 ntBASIC3.64□□□□□ -1.83
VSX1Q9NZR4 Y_RNA.394-201ENST00000383942 103 ntBASIC3.64□□□□□ -1.83
VSX1Q9NZR4 RNU6-601P-201ENST00000384540 107 ntBASIC3.64□□□□□ -1.83
VSX1Q9NZR4 FAR2P2-201ENST00000413041 594 ntBASIC3.64□□□□□ -1.83
VSX1Q9NZR4 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC3.64□□□□□ -1.83
VSX1Q9NZR4 AC063979.1-201ENST00000415539 377 ntBASIC3.64□□□□□ -1.83
VSX1Q9NZR4 RPL21P90-201ENST00000415692 466 ntBASIC3.64□□□□□ -1.83
VSX1Q9NZR4 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC3.64□□□□□ -1.83
VSX1Q9NZR4 RPL21P109-201ENST00000422213 475 ntBASIC3.64□□□□□ -1.83
VSX1Q9NZR4 AC245028.1-201ENST00000423259 256 ntBASIC3.64□□□□□ -1.83
VSX1Q9NZR4 ARF4P2-201ENST00000430209 526 ntBASIC3.64□□□□□ -1.83
VSX1Q9NZR4 AL358472.1-201ENST00000431295 329 ntBASIC3.64□□□□□ -1.83
VSX1Q9NZR4 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.64□□□□□ -1.83
VSX1Q9NZR4 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.64□□□□□ -1.83
VSX1Q9NZR4 AC026979.1-201ENST00000492525 396 ntBASIC3.64□□□□□ -1.83
VSX1Q9NZR4 AC005741.1-201ENST00000511094 432 ntBASIC3.64□□□□□ -1.83
VSX1Q9NZR4 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.64□□□□□ -1.83
VSX1Q9NZR4 RNU1-54P-201ENST00000517181 120 ntBASIC3.64□□□□□ -1.83
VSX1Q9NZR4 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.64□□□□□ -1.83
VSX1Q9NZR4 AC087369.1-201ENST00000520775 996 ntBASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 130.9 ms