Protein–RNA interactions for Protein: Q9BTN0

LRFN3, Leucine-rich repeat and fibronectin type-III domain-containing protein 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN3Q9BTN0 AL359922.3-201ENST00000624779 1670 ntBASIC3.99□□□□□ -1.77
LRFN3Q9BTN0 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.99□□□□□ -1.77
LRFN3Q9BTN0 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
LRFN3Q9BTN0 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.99□□□□□ -1.77
LRFN3Q9BTN0 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
LRFN3Q9BTN0 AC090740.1-201ENST00000623193 2262 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 MIR449A-201ENST00000362113 91 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 RNA5SP52-201ENST00000362448 134 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 RNA5SP307-201ENST00000362863 116 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 RNU6-1287P-201ENST00000362914 107 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 Y_RNA.146-201ENST00000363549 102 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 SNORD115-7-201ENST00000365306 82 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 SNORA33.2-201ENST00000365413 134 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 RNU6-1029P-201ENST00000384109 107 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 RNU6-1060P-201ENST00000384664 107 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 RPL5P18-201ENST00000406671 891 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 RNU4-46P-201ENST00000410818 138 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 SNORA74C-2-201ENST00000411179 201 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 AC080125.1-201ENST00000414888 684 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 AF228730.2-201ENST00000438784 848 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 AC073415.1-201ENST00000449240 153 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 AC133473.1-201ENST00000455173 299 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 PPP1R2P5-201ENST00000457256 603 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 RPS29P15-201ENST00000458329 171 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 Y_RNA.631-201ENST00000459607 101 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 AC007547.1-201ENST00000462177 490 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 AC027575.1-201ENST00000481064 460 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 AC090096.1-201ENST00000489168 390 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 TTC39CP1-201ENST00000512513 755 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 Y_RNA.711-201ENST00000516993 102 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 RN7SKP256-201ENST00000517201 314 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 FRG2DP-202ENST00000566967 323 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 AC008737.2-201ENST00000599446 118 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 RPL12P50-201ENST00000603116 116 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 AC007546.2-201ENST00000623996 360 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 AL133216.2-202ENST00000634512 349 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 MTND5P16-201ENST00000460269 1703 ntBASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.98□□□□□ -1.77
LRFN3Q9BTN0 ASNSP3-201ENST00000451989 1306 ntBASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 SNORD37.1-201ENST00000390968 65 ntBASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 RNA5SP293-201ENST00000410527 113 ntBASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 ATP5A1P2-201ENST00000412323 255 ntBASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 OR6C66P-201ENST00000414917 930 ntBASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 AC093106.2-201ENST00000428212 385 ntBASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 Z82205.1-201ENST00000428456 297 ntBASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 IPO7P1-201ENST00000442031 636 ntBASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 MTND3P16-201ENST00000452205 344 ntBASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 AL445433.1-201ENST00000457507 257 ntBASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 S100A11P2-201ENST00000467589 312 ntBASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 CREM-226ENST00000469949 721 ntTSL 3 BASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 AC104806.1-201ENST00000508720 308 ntBASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 RNU4ATAC8P-201ENST00000516196 109 ntBASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 RNA5SP309-201ENST00000516670 106 ntBASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 YPEL5P3-201ENST00000547227 352 ntBASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 MIR4703-201ENST00000577728 79 ntBASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 MIR432-201ENST00000606207 94 ntBASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 AC012409.4-201ENST00000612923 249 ntBASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 AC011155.2-201ENST00000623202 216 ntBASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
LRFN3Q9BTN0 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms