Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC013470.4-201ENST00000619978 986 ntBASIC0.43□□□□□ -2.34
VPS13AQ96RL7 MRPL35P1-201ENST00000404272 572 ntBASIC0.43□□□□□ -2.34
VPS13AQ96RL7 MTND6P13-201ENST00000443510 523 ntBASIC0.43□□□□□ -2.34
VPS13AQ96RL7 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC0.43□□□□□ -2.34
VPS13AQ96RL7 CDC42P4-201ENST00000510507 563 ntBASIC0.43□□□□□ -2.34
VPS13AQ96RL7 AC013268.2-201ENST00000420753 337 ntBASIC0.42□□□□□ -2.34
VPS13AQ96RL7 AC008945.2-201ENST00000606056 604 ntBASIC0.42□□□□□ -2.34
VPS13AQ96RL7 AC000123.2-201ENST00000623124 461 ntBASIC0.42□□□□□ -2.34
VPS13AQ96RL7 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC0.42□□□□□ -2.34
VPS13AQ96RL7 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC0.42□□□□□ -2.34
VPS13AQ96RL7 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC0.42□□□□□ -2.34
VPS13AQ96RL7 AC083875.1-201ENST00000419509 405 ntBASIC0.42□□□□□ -2.34
VPS13AQ96RL7 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC0.42□□□□□ -2.34
VPS13AQ96RL7 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC0.41□□□□□ -2.34
VPS13AQ96RL7 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC0.41□□□□□ -2.34
VPS13AQ96RL7 AL357075.2-201ENST00000614906 189 ntBASIC0.41□□□□□ -2.34
VPS13AQ96RL7 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC0.41□□□□□ -2.34
VPS13AQ96RL7 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC0.41□□□□□ -2.34
VPS13AQ96RL7 Z82195.2-201ENST00000612348 18351 ntBASIC0.41□□□□□ -2.34
VPS13AQ96RL7 UBE2FP1-201ENST00000416536 447 ntBASIC0.41□□□□□ -2.34
VPS13AQ96RL7 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC0.41□□□□□ -2.34
VPS13AQ96RL7 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC0.41□□□□□ -2.34
VPS13AQ96RL7 RNA5SP471-201ENST00000516971 106 ntBASIC0.41□□□□□ -2.34
VPS13AQ96RL7 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC0.41□□□□□ -2.34
VPS13AQ96RL7 RLIMP2-201ENST00000427891 1563 ntBASIC0.41□□□□□ -2.34
VPS13AQ96RL7 Y_RNA.552-201ENST00000384665 112 ntBASIC0.41□□□□□ -2.34
VPS13AQ96RL7 MIR92A1-201ENST00000385233 78 ntBASIC0.41□□□□□ -2.34
VPS13AQ96RL7 AL353706.1-201ENST00000436728 494 ntBASIC0.41□□□□□ -2.34
VPS13AQ96RL7 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC0.41□□□□□ -2.34
VPS13AQ96RL7 EIF4EP3-201ENST00000498782 656 ntBASIC0.41□□□□□ -2.34
VPS13AQ96RL7 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC0.41□□□□□ -2.34
VPS13AQ96RL7 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC0.41□□□□□ -2.34
VPS13AQ96RL7 MIR26B-201ENST00000362251 77 ntBASIC0.4□□□□□ -2.35
VPS13AQ96RL7 RNU6-700P-201ENST00000391043 107 ntBASIC0.4□□□□□ -2.35
VPS13AQ96RL7 SFR1P2-201ENST00000421841 730 ntBASIC0.4□□□□□ -2.35
VPS13AQ96RL7 RPS25P9-201ENST00000435591 252 ntBASIC0.4□□□□□ -2.35
VPS13AQ96RL7 AL358794.1-201ENST00000445689 381 ntBASIC0.4□□□□□ -2.35
VPS13AQ96RL7 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC0.4□□□□□ -2.35
VPS13AQ96RL7 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC0.4□□□□□ -2.35
VPS13AQ96RL7 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC0.4□□□□□ -2.35
VPS13AQ96RL7 TOMM22P2-201ENST00000430735 237 ntBASIC0.4□□□□□ -2.35
VPS13AQ96RL7 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC0.39□□□□□ -2.35
VPS13AQ96RL7 Y_RNA.35-201ENST00000362601 101 ntBASIC0.39□□□□□ -2.35
VPS13AQ96RL7 SNORA4.3-201ENST00000365564 137 ntBASIC0.39□□□□□ -2.35
VPS13AQ96RL7 MTCO1P56-201ENST00000401674 224 ntBASIC0.39□□□□□ -2.35
VPS13AQ96RL7 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC0.39□□□□□ -2.35
VPS13AQ96RL7 OFD1P13Y-201ENST00000431179 1232 ntBASIC0.39□□□□□ -2.35
VPS13AQ96RL7 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC0.39□□□□□ -2.35
VPS13AQ96RL7 MTND3P24-201ENST00000506306 329 ntBASIC0.39□□□□□ -2.35
VPS13AQ96RL7 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC0.39□□□□□ -2.35
VPS13AQ96RL7 RNU6-347P-201ENST00000516658 105 ntBASIC0.39□□□□□ -2.35
VPS13AQ96RL7 Y_RNA.757-201ENST00000578934 114 ntBASIC0.39□□□□□ -2.35
VPS13AQ96RL7 AC083865.1-201ENST00000636634 831 ntBASIC0.39□□□□□ -2.35
VPS13AQ96RL7 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC0.39□□□□□ -2.35
VPS13AQ96RL7 OR9R1P-201ENST00000412200 877 ntBASIC0.39□□□□□ -2.35
VPS13AQ96RL7 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC0.39□□□□□ -2.35
VPS13AQ96RL7 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC0.39□□□□□ -2.35
VPS13AQ96RL7 SNORD124-201ENST00000459577 104 ntBASIC0.39□□□□□ -2.35
VPS13AQ96RL7 SNORA3.4-201ENST00000515969 96 ntBASIC0.39□□□□□ -2.35
VPS13AQ96RL7 MIR4493-201ENST00000584016 73 ntBASIC0.39□□□□□ -2.35
VPS13AQ96RL7 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC0.39□□□□□ -2.35
VPS13AQ96RL7 AC073569.3-201ENST00000619055 682 ntBASIC0.39□□□□□ -2.35
VPS13AQ96RL7 RNU1-58P-201ENST00000362413 163 ntBASIC0.39□□□□□ -2.35
VPS13AQ96RL7 RAB9AP5-201ENST00000437794 597 ntBASIC0.39□□□□□ -2.35
VPS13AQ96RL7 PRELID3BP1-201ENST00000457142 540 ntBASIC0.39□□□□□ -2.35
VPS13AQ96RL7 MIR5190-201ENST00000581537 80 ntBASIC0.39□□□□□ -2.35
VPS13AQ96RL7 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC0.39□□□□□ -2.35
VPS13AQ96RL7 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.39□□□□□ -2.35
VPS13AQ96RL7 MIR101-1-201ENST00000362265 75 ntBASIC0.38□□□□□ -2.35
VPS13AQ96RL7 Y_RNA.25-201ENST00000362528 102 ntBASIC0.38□□□□□ -2.35
VPS13AQ96RL7 SNORA51.6-201ENST00000384151 125 ntBASIC0.38□□□□□ -2.35
VPS13AQ96RL7 AL161449.1-201ENST00000414531 1199 ntBASIC0.38□□□□□ -2.35
VPS13AQ96RL7 AC245047.4-201ENST00000433189 144 ntBASIC0.38□□□□□ -2.35
VPS13AQ96RL7 RPS26P56-201ENST00000444468 240 ntBASIC0.38□□□□□ -2.35
VPS13AQ96RL7 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC0.38□□□□□ -2.35
VPS13AQ96RL7 CBX3P3-201ENST00000508108 532 ntBASIC0.38□□□□□ -2.35
VPS13AQ96RL7 RNU4-57P-201ENST00000515980 135 ntBASIC0.38□□□□□ -2.35
VPS13AQ96RL7 RNU4-73P-201ENST00000363164 141 ntBASIC0.38□□□□□ -2.35
VPS13AQ96RL7 RPS6P14-201ENST00000425165 719 ntBASIC0.38□□□□□ -2.35
VPS13AQ96RL7 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.38□□□□□ -2.35
VPS13AQ96RL7 uc_338.9-201ENST00000617424 182 ntBASIC0.38□□□□□ -2.35
VPS13AQ96RL7 AC006249.1-201ENST00000621223 471 ntBASIC0.37□□□□□ -2.35
VPS13AQ96RL7 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC0.37□□□□□ -2.35
VPS13AQ96RL7 AC008555.8-201ENST00000623602 2168 ntBASIC0.37□□□□□ -2.35
VPS13AQ96RL7 Y_RNA.185-201ENST00000363894 100 ntBASIC0.37□□□□□ -2.35
VPS13AQ96RL7 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC0.37□□□□□ -2.35
VPS13AQ96RL7 MTCYBP23-201ENST00000558717 1102 ntBASIC0.37□□□□□ -2.35
VPS13AQ96RL7 CLIC4P2-201ENST00000601934 717 ntBASIC0.37□□□□□ -2.35
VPS13AQ96RL7 AC104763.3-201ENST00000613765 618 ntBASIC0.37□□□□□ -2.35
VPS13AQ96RL7 UBE2Q2P1-202ENST00000354771 883 ntBASIC0.37□□□□□ -2.35
VPS13AQ96RL7 RNU6-1187P-201ENST00000364771 110 ntBASIC0.37□□□□□ -2.35
VPS13AQ96RL7 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.37□□□□□ -2.35
VPS13AQ96RL7 AL356432.1-201ENST00000405809 419 ntBASIC0.37□□□□□ -2.35
VPS13AQ96RL7 UBE2V2P3-201ENST00000433562 437 ntBASIC0.37□□□□□ -2.35
VPS13AQ96RL7 HMGN2P13-201ENST00000476476 274 ntBASIC0.37□□□□□ -2.35
VPS13AQ96RL7 SDR42E1P2-201ENST00000614861 481 ntBASIC0.37□□□□□ -2.35
VPS13AQ96RL7 SDR42E1P4-201ENST00000620894 481 ntBASIC0.37□□□□□ -2.35
VPS13AQ96RL7 AC110491.1-201ENST00000562191 2010 ntBASIC0.36□□□□□ -2.35
VPS13AQ96RL7 MIR32-201ENST00000384965 70 ntBASIC0.36□□□□□ -2.35
VPS13AQ96RL7 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC0.36□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms