Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
ERCC4Q92889 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC4.29□□□□□ -1.72
ERCC4Q92889 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
ERCC4Q92889 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
ERCC4Q92889 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
ERCC4Q92889 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
ERCC4Q92889 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
ERCC4Q92889 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.28□□□□□ -1.72
ERCC4Q92889 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
ERCC4Q92889 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
ERCC4Q92889 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
ERCC4Q92889 SNORD3H-201ENST00000384486 214 ntBASIC4.28□□□□□ -1.72
ERCC4Q92889 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
ERCC4Q92889 SNORA16.2-201ENST00000390991 127 ntBASIC4.28□□□□□ -1.72
ERCC4Q92889 RNA5SP317-201ENST00000410176 116 ntBASIC4.28□□□□□ -1.72
ERCC4Q92889 RN7SKP158-201ENST00000410453 326 ntBASIC4.28□□□□□ -1.72
ERCC4Q92889 RNA5SP311-201ENST00000411290 116 ntBASIC4.28□□□□□ -1.72
ERCC4Q92889 RPL7P10-201ENST00000417407 739 ntBASIC4.28□□□□□ -1.72
ERCC4Q92889 ACTR3BP6-201ENST00000422332 1241 ntBASIC4.28□□□□□ -1.72
ERCC4Q92889 NDUFB1P1-201ENST00000435191 180 ntBASIC4.28□□□□□ -1.72
ERCC4Q92889 GTF2IP13-201ENST00000438487 386 ntBASIC4.28□□□□□ -1.72
ERCC4Q92889 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC4.28□□□□□ -1.72
ERCC4Q92889 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC4.28□□□□□ -1.72
ERCC4Q92889 RPL26P6-201ENST00000440913 438 ntBASIC4.28□□□□□ -1.72
ERCC4Q92889 NEFMP1-201ENST00000443423 1006 ntBASIC4.28□□□□□ -1.72
ERCC4Q92889 AC104058.1-201ENST00000448028 297 ntBASIC4.28□□□□□ -1.72
ERCC4Q92889 HMGB3P8-201ENST00000449709 577 ntBASIC4.28□□□□□ -1.72
ERCC4Q92889 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC4.28□□□□□ -1.72
ERCC4Q92889 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC4.28□□□□□ -1.72
ERCC4Q92889 Y_RNA.639-201ENST00000458981 102 ntBASIC4.28□□□□□ -1.72
ERCC4Q92889 RNU7-152P-201ENST00000458982 64 ntBASIC4.28□□□□□ -1.72
ERCC4Q92889 VN1R17P-201ENST00000472048 1090 ntBASIC4.28□□□□□ -1.72
ERCC4Q92889 AC096576.1-201ENST00000489014 359 ntBASIC4.28□□□□□ -1.72
ERCC4Q92889 AC110792.1-201ENST00000491826 472 ntBASIC4.28□□□□□ -1.72
ERCC4Q92889 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.28□□□□□ -1.72
ERCC4Q92889 RNA5SP315-201ENST00000516340 116 ntBASIC4.28□□□□□ -1.72
ERCC4Q92889 Y_RNA.682-201ENST00000516457 100 ntBASIC4.28□□□□□ -1.72
ERCC4Q92889 RN7SKP60-201ENST00000516985 239 ntBASIC4.28□□□□□ -1.72
ERCC4Q92889 RNA5SP312-201ENST00000517068 116 ntBASIC4.28□□□□□ -1.72
ERCC4Q92889 AC008489.1-201ENST00000524271 483 ntBASIC4.28□□□□□ -1.72
ERCC4Q92889 AP004371.1-201ENST00000525240 214 ntBASIC4.28□□□□□ -1.72
ERCC4Q92889 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
ERCC4Q92889 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC4.28□□□□□ -1.72
ERCC4Q92889 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC4.28□□□□□ -1.72
ERCC4Q92889 AL138889.2-201ENST00000603883 242 ntBASIC4.28□□□□□ -1.72
ERCC4Q92889 AC104763.2-201ENST00000604179 382 ntBASIC4.28□□□□□ -1.72
ERCC4Q92889 AL670379.10-201ENST00000604330 253 ntBASIC4.28□□□□□ -1.72
ERCC4Q92889 AL670379.9-201ENST00000605428 253 ntBASIC4.28□□□□□ -1.72
ERCC4Q92889 SDR42E1P2-201ENST00000614861 481 ntBASIC4.28□□□□□ -1.72
ERCC4Q92889 AC015967.1-201ENST00000619893 476 ntBASIC4.28□□□□□ -1.72
ERCC4Q92889 MTND5P42-201ENST00000637720 498 ntBASIC4.28□□□□□ -1.72
ERCC4Q92889 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
ERCC4Q92889 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC4.28□□□□□ -1.72
ERCC4Q92889 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
ERCC4Q92889 MFSD8-236ENST00000641509 4050 ntBASIC4.27□□□□□ -1.73
ERCC4Q92889 AP001148.1-201ENST00000624124 2359 ntBASIC4.27□□□□□ -1.73
ERCC4Q92889 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.27□□□□□ -1.73
ERCC4Q92889 ZNF736P3Y-201ENST00000428264 1465 ntBASIC4.27□□□□□ -1.73
ERCC4Q92889 Y_RNA.135-201ENST00000363439 95 ntBASIC4.27□□□□□ -1.73
ERCC4Q92889 Y_RNA.259-201ENST00000364619 101 ntBASIC4.27□□□□□ -1.73
ERCC4Q92889 SNORA36C-201ENST00000384289 132 ntBASIC4.27□□□□□ -1.73
ERCC4Q92889 RNU6-43P-201ENST00000384302 107 ntBASIC4.27□□□□□ -1.73
ERCC4Q92889 RNU1-13P-201ENST00000384499 162 ntBASIC4.27□□□□□ -1.73
ERCC4Q92889 RNU6-817P-201ENST00000391083 104 ntBASIC4.27□□□□□ -1.73
ERCC4Q92889 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
ERCC4Q92889 BX682237.1-201ENST00000415016 335 ntBASIC4.27□□□□□ -1.73
ERCC4Q92889 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.27□□□□□ -1.73
ERCC4Q92889 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC4.27□□□□□ -1.73
ERCC4Q92889 AL353729.1-201ENST00000425044 720 ntBASIC4.27□□□□□ -1.73
ERCC4Q92889 AL669831.1-202ENST00000428504 417 ntBASIC4.27□□□□□ -1.73
ERCC4Q92889 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.27□□□□□ -1.73
ERCC4Q92889 HSFY6P-201ENST00000445573 403 ntBASIC4.27□□□□□ -1.73
ERCC4Q92889 AL359073.1-201ENST00000448036 403 ntBASIC4.27□□□□□ -1.73
ERCC4Q92889 DYNLL1P5-201ENST00000467158 270 ntBASIC4.27□□□□□ -1.73
ERCC4Q92889 SNRPGP3-201ENST00000469405 227 ntBASIC4.27□□□□□ -1.73
ERCC4Q92889 AC092451.1-201ENST00000480211 153 ntBASIC4.27□□□□□ -1.73
ERCC4Q92889 VN1R105P-201ENST00000486595 910 ntBASIC4.27□□□□□ -1.73
ERCC4Q92889 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC4.27□□□□□ -1.73
ERCC4Q92889 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC4.27□□□□□ -1.73
ERCC4Q92889 RNU6-390P-201ENST00000516259 103 ntBASIC4.27□□□□□ -1.73
ERCC4Q92889 RN7SKP83-201ENST00000516512 178 ntBASIC4.27□□□□□ -1.73
ERCC4Q92889 RNU6-256P-201ENST00000516747 97 ntBASIC4.27□□□□□ -1.73
ERCC4Q92889 RNU6-566P-201ENST00000516790 107 ntBASIC4.27□□□□□ -1.73
ERCC4Q92889 Y_RNA.718-201ENST00000517110 102 ntBASIC4.27□□□□□ -1.73
ERCC4Q92889 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC4.27□□□□□ -1.73
ERCC4Q92889 MTCO3P13-201ENST00000577757 781 ntBASIC4.27□□□□□ -1.73
ERCC4Q92889 AC023043.2-201ENST00000589678 1026 ntBASIC4.27□□□□□ -1.73
ERCC4Q92889 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.27□□□□□ -1.73
ERCC4Q92889 APOOP1-201ENST00000604695 592 ntBASIC4.27□□□□□ -1.73
ERCC4Q92889 AL137849.1-201ENST00000604767 169 ntBASIC4.27□□□□□ -1.73
ERCC4Q92889 AC245389.1-201ENST00000605141 529 ntBASIC4.27□□□□□ -1.73
ERCC4Q92889 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.27□□□□□ -1.73
ERCC4Q92889 AC112484.5-201ENST00000624189 228 ntBASIC4.27□□□□□ -1.73
ERCC4Q92889 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
ERCC4Q92889 AL365440.1-201ENST00000436135 2167 ntBASIC4.27□□□□□ -1.73
ERCC4Q92889 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC4.27□□□□□ -1.73
ERCC4Q92889 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
ERCC4Q92889 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
ERCC4Q92889 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
ERCC4Q92889 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 93.4 ms