Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 RPS27AP14-201ENST00000422868 454 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 AC093106.2-201ENST00000428212 385 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 MTND1P28-201ENST00000435623 950 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 RPL37P21-201ENST00000435890 276 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 AC107083.1-201ENST00000439643 279 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 CECR9-201ENST00000453421 199 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 RNU7-26P-201ENST00000458980 63 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 MTND4LP3-201ENST00000468320 276 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 LINC00888-204ENST00000487386 421 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 AC005178.1-201ENST00000508392 440 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 MRPS36P2-201ENST00000512569 299 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 AC116347.2-201ENST00000514912 523 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 RNU6-390P-201ENST00000516259 103 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 RNU6-201P-201ENST00000517100 61 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 AL158211.1-201ENST00000566763 763 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 MIR3146-201ENST00000580367 79 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 ABBA01006766.1-201ENST00000584728 294 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 AC068790.3-201ENST00000602988 553 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 MTCYBP22-201ENST00000603788 447 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 AC098826.3-201ENST00000603823 466 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 AC112187.2-201ENST00000604345 283 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 AL161798.1-201ENST00000604630 131 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 AL161729.4-201ENST00000604650 476 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 OR10AB1P-201ENST00000609613 938 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 AC131159.1-201ENST00000621854 213 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 AC073308.1-201ENST00000623696 305 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 AC091953.2-201ENST00000623979 160 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 AC068057.2-201ENST00000624047 895 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 AC092608.2-201ENST00000624427 218 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 RNU6-511P-201ENST00000363496 107 ntBASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 RNU6-884P-201ENST00000363889 107 ntBASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 SNORD114-30-201ENST00000364448 72 ntBASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 RNY4P16-201ENST00000364768 94 ntBASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 U8.8-201ENST00000365399 135 ntBASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 AL356057.3-201ENST00000402607 340 ntBASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 MTCYBP36-201ENST00000404146 440 ntBASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 RNU2-36P-201ENST00000410361 191 ntBASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 AL353777.1-201ENST00000425552 326 ntBASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 ELOCP14-201ENST00000428070 331 ntBASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 USP12PX-201ENST00000432383 1057 ntBASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 AL445567.1-201ENST00000439121 144 ntBASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 ELOCP7-201ENST00000439968 331 ntBASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 RNU7-23P-201ENST00000459465 62 ntBASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 MRPS17P3-201ENST00000465453 385 ntBASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 MTND5P13-201ENST00000513046 1079 ntBASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 AP003181.2-201ENST00000528941 181 ntBASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 AC079600.2-201ENST00000550076 130 ntBASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 AC008015.1-201ENST00000555505 465 ntBASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 AL359212.1-201ENST00000556608 614 ntBASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 AC002545.1-201ENST00000592511 181 ntBASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 AL358072.1-201ENST00000604156 575 ntBASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 MIR92B-201ENST00000607575 96 ntBASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 HMGB1P24-202ENST00000615653 685 ntBASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 AC092140.2-201ENST00000618027 521 ntBASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.17□□□□□ -2.06
CCDC54Q8NEL0 AC016717.2-201ENST00000609089 5141 ntBASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 RNU6-1167P-201ENST00000363227 94 ntBASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 RNU6-778P-201ENST00000363269 103 ntBASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 RPA3-203ENST00000401447 414 ntTSL 3 BASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 BTF3L4P3-201ENST00000418879 476 ntBASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 AC019097.1-201ENST00000424783 735 ntBASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 ZNF863P-201ENST00000426746 417 ntBASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 AL590383.1-201ENST00000428602 75 ntBASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 DPPA3P1-201ENST00000448050 469 ntBASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 FABP5P15-201ENST00000453566 214 ntBASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 AC233279.1-201ENST00000455300 423 ntBASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 AL139109.1-201ENST00000455491 297 ntBASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 AL139824.2-201ENST00000458731 1095 ntBASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 RPL36AP51-201ENST00000487216 318 ntBASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 AC107222.1-201ENST00000510899 637 ntBASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 MRPS33P3-201ENST00000513456 322 ntBASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC2.16□□□□□ -2.06
CCDC54Q8NEL0 SNORA31.18-201ENST00000517043 134 ntBASIC2.16□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms