Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC023141.11-201ENST00000508864 202 ntBASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 BTF3P12-201ENST00000519620 469 ntBASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 MIR3605-201ENST00000583214 100 ntBASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 BNIP3P40-201ENST00000596017 556 ntBASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 AC005046.1-201ENST00000608515 625 ntBASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 AC016597.2-201ENST00000613256 341 ntBASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 AC022960.3-201ENST00000619794 441 ntBASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 AP002782.1-201ENST00000623107 614 ntBASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 OR4G3P-201ENST00000633500 913 ntBASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 MIR6733-201ENST00000635723 61 ntBASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 AC092447.7-201ENST00000422212 1621 ntBASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 ASNSP3-201ENST00000451989 1306 ntBASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 MTND4P27-201ENST00000450813 1354 ntBASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 RNY4P24-201ENST00000362735 96 ntBASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 Y_RNA.302-201ENST00000364997 102 ntBASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 RNU6-1072P-201ENST00000384703 107 ntBASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 RNU6-443P-201ENST00000384780 107 ntBASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 MIR592-201ENST00000384959 97 ntBASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 RNU6-584P-201ENST00000410350 95 ntBASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 HMGB3P12-201ENST00000438745 556 ntBASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 FABP5P15-201ENST00000453566 214 ntBASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 AC008549.1-201ENST00000512900 643 ntBASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 RNA5SP76-201ENST00000516277 87 ntBASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 SNORA9.3-201ENST00000516383 129 ntBASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 MIR3167-201ENST00000579623 85 ntBASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 MIR3199-1-201ENST00000582434 88 ntBASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 MIR5194-201ENST00000582634 120 ntBASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 AL450336.1-201ENST00000605180 586 ntBASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 AL627309.6-201ENST00000606857 840 ntBASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 AL355472.4-201ENST00000610233 626 ntBASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 AL589743.7-201ENST00000612637 233 ntBASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 CTSLP2-204ENST00000629029 392 ntBASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
HDDC3Q8N4P3 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 SNORA38-201ENST00000363946 132 ntBASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 MIR181B1-201ENST00000385240 110 ntBASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 AL139397.2-201ENST00000404529 772 ntBASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 SNORD88.1-201ENST00000408684 91 ntBASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 ELOCP17-201ENST00000414751 326 ntBASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 AL008987.1-201ENST00000415528 237 ntBASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 ST13P20-201ENST00000447996 1065 ntBASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 AL121769.1-201ENST00000469473 401 ntBASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 TRBV1-201ENST00000476502 284 ntBASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 RPL7P20-201ENST00000520308 745 ntBASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 MIR4658-201ENST00000584344 65 ntBASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 AC061975.8-201ENST00000587058 721 ntBASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 AC112187.2-201ENST00000604345 283 ntBASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 AC092106.3-201ENST00000611308 722 ntBASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 AC107871.2-201ENST00000612894 502 ntBASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 AC025594.3-201ENST00000613068 790 ntBASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 AL449363.1-201ENST00000617815 186 ntBASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 ZNF658B-202ENST00000615961 3375 ntBASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.66□□□□□ -1.98
HDDC3Q8N4P3 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC2.65□□□□□ -1.98
HDDC3Q8N4P3 Z82195.2-201ENST00000612348 18351 ntBASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 RNU6-701P-201ENST00000384059 107 ntBASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 RNU6-1328P-201ENST00000410938 106 ntBASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 HMGN2P35-201ENST00000412164 270 ntBASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 ZNF90P2-204ENST00000419323 1075 ntBASIC2.65□□□□□ -1.99
HDDC3Q8N4P3 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC2.65□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms