Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
USP53Q70EK8 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC4.22□□□□□ -1.73
USP53Q70EK8 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC4.22□□□□□ -1.73
USP53Q70EK8 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.22□□□□□ -1.73
USP53Q70EK8 OR1M4P-201ENST00000589199 287 ntBASIC4.22□□□□□ -1.73
USP53Q70EK8 AC008737.2-201ENST00000599446 118 ntBASIC4.22□□□□□ -1.73
USP53Q70EK8 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
USP53Q70EK8 AC140479.6-201ENST00000633535 357 ntBASIC4.22□□□□□ -1.73
USP53Q70EK8 AL049641.1-201ENST00000441055 1948 ntBASIC4.22□□□□□ -1.73
USP53Q70EK8 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
USP53Q70EK8 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
USP53Q70EK8 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
USP53Q70EK8 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.22□□□□□ -1.73
USP53Q70EK8 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
USP53Q70EK8 AC027290.2-201ENST00000623210 18662 ntBASIC4.22□□□□□ -1.73
USP53Q70EK8 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC4.22□□□□□ -1.73
USP53Q70EK8 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
USP53Q70EK8 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
USP53Q70EK8 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
USP53Q70EK8 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC4.21□□□□□ -1.74
USP53Q70EK8 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
USP53Q70EK8 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.21□□□□□ -1.74
USP53Q70EK8 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
USP53Q70EK8 MIR412-201ENST00000362142 91 ntBASIC4.21□□□□□ -1.74
USP53Q70EK8 RNU1-20P-201ENST00000363314 162 ntBASIC4.21□□□□□ -1.74
USP53Q70EK8 AC117470.1-201ENST00000381974 330 ntBASIC4.21□□□□□ -1.74
USP53Q70EK8 Y_RNA.463-201ENST00000384271 102 ntBASIC4.21□□□□□ -1.74
USP53Q70EK8 MIR607-201ENST00000385241 96 ntBASIC4.21□□□□□ -1.74
USP53Q70EK8 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC4.21□□□□□ -1.74
USP53Q70EK8 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC4.21□□□□□ -1.74
USP53Q70EK8 USMG5P1-201ENST00000425964 177 ntBASIC4.21□□□□□ -1.74
USP53Q70EK8 RPL21P66-201ENST00000426566 466 ntBASIC4.21□□□□□ -1.74
USP53Q70EK8 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC4.21□□□□□ -1.74
USP53Q70EK8 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.21□□□□□ -1.74
USP53Q70EK8 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC4.21□□□□□ -1.74
USP53Q70EK8 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC4.21□□□□□ -1.74
USP53Q70EK8 RPL35AP15-201ENST00000468042 339 ntBASIC4.21□□□□□ -1.74
USP53Q70EK8 RNA5SP49-201ENST00000516450 115 ntBASIC4.21□□□□□ -1.74
USP53Q70EK8 RNA5SP290-201ENST00000517133 127 ntBASIC4.21□□□□□ -1.74
USP53Q70EK8 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.21□□□□□ -1.74
USP53Q70EK8 AC104576.1-201ENST00000524225 88 ntBASIC4.21□□□□□ -1.74
USP53Q70EK8 AC091516.1-201ENST00000549191 703 ntBASIC4.21□□□□□ -1.74
USP53Q70EK8 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.21□□□□□ -1.74
USP53Q70EK8 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC4.21□□□□□ -1.74
USP53Q70EK8 AC010201.1-201ENST00000605051 540 ntBASIC4.21□□□□□ -1.74
USP53Q70EK8 AC011890.2-201ENST00000613393 294 ntBASIC4.21□□□□□ -1.74
USP53Q70EK8 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
USP53Q70EK8 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
USP53Q70EK8 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
USP53Q70EK8 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
USP53Q70EK8 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.21□□□□□ -1.74
USP53Q70EK8 AC008568.2-201ENST00000623862 2313 ntBASIC4.21□□□□□ -1.74
USP53Q70EK8 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
USP53Q70EK8 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.21□□□□□ -1.74
USP53Q70EK8 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.2□□□□□ -1.74
USP53Q70EK8 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.2□□□□□ -1.74
USP53Q70EK8 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.2□□□□□ -1.74
USP53Q70EK8 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
USP53Q70EK8 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
USP53Q70EK8 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
USP53Q70EK8 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC4.2□□□□□ -1.74
USP53Q70EK8 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
USP53Q70EK8 AC092435.4-201ENST00000623012 4159 ntBASIC4.2□□□□□ -1.74
USP53Q70EK8 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
USP53Q70EK8 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
USP53Q70EK8 RNA5SP502-201ENST00000362694 119 ntBASIC4.2□□□□□ -1.74
USP53Q70EK8 RNA5SP307-201ENST00000362863 116 ntBASIC4.2□□□□□ -1.74
USP53Q70EK8 RNA5SP175-201ENST00000364275 119 ntBASIC4.2□□□□□ -1.74
USP53Q70EK8 Y_RNA.252-201ENST00000364556 101 ntBASIC4.2□□□□□ -1.74
USP53Q70EK8 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC4.2□□□□□ -1.74
USP53Q70EK8 RPS15AP6-201ENST00000420703 385 ntBASIC4.2□□□□□ -1.74
USP53Q70EK8 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.2□□□□□ -1.74
USP53Q70EK8 AL590383.1-201ENST00000428602 75 ntBASIC4.2□□□□□ -1.74
USP53Q70EK8 AC007919.1-201ENST00000429380 217 ntBASIC4.2□□□□□ -1.74
USP53Q70EK8 AC097713.2-201ENST00000430199 356 ntBASIC4.2□□□□□ -1.74
USP53Q70EK8 AC069285.2-201ENST00000440210 275 ntBASIC4.2□□□□□ -1.74
USP53Q70EK8 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC4.2□□□□□ -1.74
USP53Q70EK8 NDUFB1P2-201ENST00000449477 176 ntBASIC4.2□□□□□ -1.74
USP53Q70EK8 RN7SL542P-201ENST00000467147 294 ntBASIC4.2□□□□□ -1.74
USP53Q70EK8 RN7SL812P-201ENST00000493791 279 ntBASIC4.2□□□□□ -1.74
USP53Q70EK8 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.2□□□□□ -1.74
USP53Q70EK8 AC008958.1-201ENST00000511047 682 ntBASIC4.2□□□□□ -1.74
USP53Q70EK8 PTP4A1P4-201ENST00000512479 322 ntBASIC4.2□□□□□ -1.74
USP53Q70EK8 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC4.2□□□□□ -1.74
USP53Q70EK8 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.2□□□□□ -1.74
USP53Q70EK8 MIR4286-201ENST00000580651 93 ntBASIC4.2□□□□□ -1.74
USP53Q70EK8 AC007938.3-201ENST00000604965 623 ntBASIC4.2□□□□□ -1.74
USP53Q70EK8 AC015813.4-201ENST00000610469 179 ntBASIC4.2□□□□□ -1.74
USP53Q70EK8 AC008121.3-201ENST00000618726 433 ntBASIC4.2□□□□□ -1.74
USP53Q70EK8 CD36-221ENST00000534394 1741 ntTSL 2 BASIC4.2□□□□□ -1.74
USP53Q70EK8 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.2□□□□□ -1.74
USP53Q70EK8 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.2□□□□□ -1.74
USP53Q70EK8 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.2□□□□□ -1.74
USP53Q70EK8 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
USP53Q70EK8 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
USP53Q70EK8 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.19□□□□□ -1.74
USP53Q70EK8 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
USP53Q70EK8 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.19□□□□□ -1.74
USP53Q70EK8 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
USP53Q70EK8 RNU6-384P-201ENST00000364900 104 ntBASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 247.3 ms