Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 UBE2Q2P9-201ENST00000490086 202 ntBASIC0.76□□□□□ -2.29
USF3Q68DE3 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC0.76□□□□□ -2.29
USF3Q68DE3 DEFB108E-201ENST00000524692 240 ntBASIC0.76□□□□□ -2.29
USF3Q68DE3 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC0.76□□□□□ -2.29
USF3Q68DE3 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC0.76□□□□□ -2.29
USF3Q68DE3 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.76□□□□□ -2.29
USF3Q68DE3 DPRXP5-201ENST00000604662 539 ntBASIC0.76□□□□□ -2.29
USF3Q68DE3 AC012443.1-201ENST00000605605 231 ntBASIC0.76□□□□□ -2.29
USF3Q68DE3 AC007038.2-201ENST00000608095 740 ntBASIC0.76□□□□□ -2.29
USF3Q68DE3 AL138955.1-201ENST00000622881 1040 ntBASIC0.76□□□□□ -2.29
USF3Q68DE3 AL513185.3-201ENST00000433335 1300 ntBASIC0.76□□□□□ -2.29
USF3Q68DE3 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC0.76□□□□□ -2.29
USF3Q68DE3 AC008555.8-201ENST00000623602 2168 ntBASIC0.76□□□□□ -2.29
USF3Q68DE3 AL161722.3-201ENST00000605789 2983 ntBASIC0.76□□□□□ -2.29
USF3Q68DE3 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
USF3Q68DE3 SNORA16B-201ENST00000364674 135 ntBASIC0.76□□□□□ -2.29
USF3Q68DE3 Y_RNA.493-201ENST00000384422 102 ntBASIC0.76□□□□□ -2.29
USF3Q68DE3 MTATP6P31-201ENST00000406985 692 ntBASIC0.76□□□□□ -2.29
USF3Q68DE3 AL358176.2-201ENST00000425769 204 ntBASIC0.76□□□□□ -2.29
USF3Q68DE3 AL365496.1-201ENST00000426885 215 ntBASIC0.76□□□□□ -2.29
USF3Q68DE3 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC0.76□□□□□ -2.29
USF3Q68DE3 EZH2P1-201ENST00000431167 291 ntBASIC0.76□□□□□ -2.29
USF3Q68DE3 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC0.76□□□□□ -2.29
USF3Q68DE3 AC234064.1-201ENST00000436312 247 ntBASIC0.76□□□□□ -2.29
USF3Q68DE3 AC118469.1-201ENST00000442943 488 ntBASIC0.76□□□□□ -2.29
USF3Q68DE3 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC0.76□□□□□ -2.29
USF3Q68DE3 AC023512.1-201ENST00000444513 499 ntBASIC0.76□□□□□ -2.29
USF3Q68DE3 AC004022.1-201ENST00000447766 1066 ntBASIC0.76□□□□□ -2.29
USF3Q68DE3 KLF3P2-201ENST00000465138 268 ntBASIC0.76□□□□□ -2.29
USF3Q68DE3 AC098862.1-201ENST00000504991 413 ntBASIC0.76□□□□□ -2.29
USF3Q68DE3 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC0.76□□□□□ -2.29
USF3Q68DE3 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC0.76□□□□□ -2.29
USF3Q68DE3 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC0.76□□□□□ -2.29
USF3Q68DE3 AC092451.2-201ENST00000538746 658 ntBASIC0.76□□□□□ -2.29
USF3Q68DE3 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC0.76□□□□□ -2.29
USF3Q68DE3 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC0.76□□□□□ -2.29
USF3Q68DE3 AP005137.2-201ENST00000609238 400 ntBASIC0.76□□□□□ -2.29
USF3Q68DE3 AC025588.4-201ENST00000615802 908 ntBASIC0.76□□□□□ -2.29
USF3Q68DE3 MIR7157-201ENST00000635801 60 ntBASIC0.76□□□□□ -2.29
USF3Q68DE3 OR5H6-203ENST00000642105 978 ntBASIC0.76□□□□□ -2.29
USF3Q68DE3 AC007785.2-201ENST00000598627 1916 ntBASIC0.75□□□□□ -2.29
USF3Q68DE3 RNU6-1249P-201ENST00000363237 111 ntBASIC0.75□□□□□ -2.29
USF3Q68DE3 RNU6-17P-201ENST00000384245 107 ntBASIC0.75□□□□□ -2.29
USF3Q68DE3 RNU6-18P-201ENST00000384527 107 ntBASIC0.75□□□□□ -2.29
USF3Q68DE3 MIR936-201ENST00000401264 98 ntBASIC0.75□□□□□ -2.29
USF3Q68DE3 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC0.75□□□□□ -2.29
USF3Q68DE3 VN1R36P-201ENST00000414936 291 ntBASIC0.75□□□□□ -2.29
USF3Q68DE3 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC0.75□□□□□ -2.29
USF3Q68DE3 AL596276.1-201ENST00000434465 418 ntBASIC0.75□□□□□ -2.29
USF3Q68DE3 SNRPGP6-201ENST00000451124 220 ntBASIC0.75□□□□□ -2.29
USF3Q68DE3 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC0.75□□□□□ -2.29
USF3Q68DE3 AC092989.1-201ENST00000481235 277 ntBASIC0.75□□□□□ -2.29
USF3Q68DE3 SCARNA3-201ENST00000517097 143 ntBASIC0.75□□□□□ -2.29
USF3Q68DE3 AC010738.1-201ENST00000604970 987 ntBASIC0.75□□□□□ -2.29
USF3Q68DE3 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC0.75□□□□□ -2.29
USF3Q68DE3 AC003001.2-201ENST00000616294 831 ntBASIC0.75□□□□□ -2.29
USF3Q68DE3 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC0.75□□□□□ -2.29
USF3Q68DE3 MIR6513-201ENST00000621188 64 ntBASIC0.75□□□□□ -2.29
USF3Q68DE3 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC0.75□□□□□ -2.29
USF3Q68DE3 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC0.75□□□□□ -2.29
USF3Q68DE3 ZBTB8OSP1-201ENST00000342688 498 ntBASIC0.74□□□□□ -2.29
USF3Q68DE3 RNU4-31P-201ENST00000384211 141 ntBASIC0.74□□□□□ -2.29
USF3Q68DE3 RNU6-220P-201ENST00000390919 107 ntBASIC0.74□□□□□ -2.29
USF3Q68DE3 EDDM3CP-201ENST00000415977 425 ntBASIC0.74□□□□□ -2.29
USF3Q68DE3 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC0.74□□□□□ -2.29
USF3Q68DE3 RPS27P1-201ENST00000450552 247 ntBASIC0.74□□□□□ -2.29
USF3Q68DE3 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC0.74□□□□□ -2.29
USF3Q68DE3 AC027575.1-201ENST00000481064 460 ntBASIC0.74□□□□□ -2.29
USF3Q68DE3 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC0.74□□□□□ -2.29
USF3Q68DE3 RPL30P5-201ENST00000494923 336 ntBASIC0.74□□□□□ -2.29
USF3Q68DE3 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC0.74□□□□□ -2.29
USF3Q68DE3 RNU6-928P-201ENST00000516876 104 ntBASIC0.74□□□□□ -2.29
USF3Q68DE3 SNORA48.10-201ENST00000516965 160 ntBASIC0.74□□□□□ -2.29
USF3Q68DE3 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC0.74□□□□□ -2.29
USF3Q68DE3 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC0.74□□□□□ -2.29
USF3Q68DE3 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC0.74□□□□□ -2.29
USF3Q68DE3 MIR3921-201ENST00000577308 85 ntBASIC0.74□□□□□ -2.29
USF3Q68DE3 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC0.74□□□□□ -2.29
USF3Q68DE3 FAM60CP-201ENST00000591086 664 ntBASIC0.74□□□□□ -2.29
USF3Q68DE3 XIAPP1-201ENST00000603162 600 ntBASIC0.74□□□□□ -2.29
USF3Q68DE3 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC0.74□□□□□ -2.29
USF3Q68DE3 AL022578.1-201ENST00000439330 1433 ntBASIC0.74□□□□□ -2.29
USF3Q68DE3 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC0.74□□□□□ -2.29
USF3Q68DE3 DEFB108F-201ENST00000344638 222 ntBASIC0.74□□□□□ -2.29
USF3Q68DE3 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC0.74□□□□□ -2.29
USF3Q68DE3 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC0.74□□□□□ -2.29
USF3Q68DE3 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC0.74□□□□□ -2.29
USF3Q68DE3 SCARNA11.3-201ENST00000517276 130 ntBASIC0.74□□□□□ -2.29
USF3Q68DE3 PTK2-220ENST00000520151 573 ntTSL 4 BASIC0.74□□□□□ -2.29
USF3Q68DE3 AP005639.2-201ENST00000527592 928 ntBASIC0.74□□□□□ -2.29
USF3Q68DE3 AC096772.1-201ENST00000609146 564 ntBASIC0.74□□□□□ -2.29
USF3Q68DE3 AC109454.4-201ENST00000623411 649 ntBASIC0.74□□□□□ -2.29
USF3Q68DE3 AL356473.1-201ENST00000406203 1408 ntBASIC0.74□□□□□ -2.29
USF3Q68DE3 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC0.74□□□□□ -2.29
USF3Q68DE3 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC0.74□□□□□ -2.29
USF3Q68DE3 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC0.74□□□□□ -2.29
USF3Q68DE3 SNORD114-23-201ENST00000363536 72 ntBASIC0.73□□□□□ -2.29
USF3Q68DE3 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC0.73□□□□□ -2.29
USF3Q68DE3 PABPC1P3-201ENST00000469174 459 ntBASIC0.73□□□□□ -2.29
USF3Q68DE3 AC105313.1-201ENST00000509121 353 ntBASIC0.73□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms