Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AP000811.1-201ENST00000603803 651 ntBASIC2.7□□□□□ -1.98
CCDC40Q4G0X9 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC2.7□□□□□ -1.98
CCDC40Q4G0X9 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC2.7□□□□□ -1.98
CCDC40Q4G0X9 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC40Q4G0X9 AL359693.1-201ENST00000614959 2407 ntBASIC2.7□□□□□ -1.98
CCDC40Q4G0X9 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.7□□□□□ -1.98
CCDC40Q4G0X9 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 AC062016.1-201ENST00000355719 319 ntBASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 RNY4P24-201ENST00000362735 96 ntBASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 U8.8-201ENST00000365399 135 ntBASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 SNORA80E-201ENST00000384744 137 ntBASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 RNU6-750P-201ENST00000390946 107 ntBASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 NDUFS5P1-201ENST00000405668 289 ntBASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 NDUFS5P4-201ENST00000412983 318 ntBASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 DNAJA1P2-201ENST00000421360 1197 ntBASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 AC090096.1-201ENST00000489168 390 ntBASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 SCARNA17.1-201ENST00000516211 143 ntBASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 SCARNA17.2-201ENST00000516334 143 ntBASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 OR5BN1P-201ENST00000532955 829 ntBASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 AC009097.3-201ENST00000563557 1018 ntBASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 MIR3616-201ENST00000584070 92 ntBASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 AF131215.7-201ENST00000602443 707 ntBASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 AL356280.1-201ENST00000603614 379 ntBASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 SCARNA17.4-201ENST00000614296 143 ntBASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 AC007490.1-201ENST00000624321 703 ntBASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 AC110491.1-201ENST00000562191 2010 ntBASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
CCDC40Q4G0X9 ELF2P3-201ENST00000445099 1506 ntBASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 AL137003.2-201ENST00000606924 2538 ntBASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 UBE2L2-201ENST00000254302 429 ntBASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 Y_RNA.97-201ENST00000363094 102 ntBASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 RNU6-1214P-201ENST00000363650 109 ntBASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 RNU6-512P-201ENST00000364438 103 ntBASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 RNU1-73P-201ENST00000383971 164 ntBASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 U8.14-201ENST00000390843 143 ntBASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 RNU2-68P-201ENST00000410878 191 ntBASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 RNA5SP184-201ENST00000411071 108 ntBASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 GPM6BP2-201ENST00000432046 144 ntBASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 GPM6BP1-201ENST00000446387 144 ntBASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 FABP5P15-201ENST00000453566 214 ntBASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 AP001486.1-201ENST00000463339 476 ntBASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 AC072039.1-201ENST00000477611 581 ntBASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 AC098591.2-201ENST00000510152 315 ntBASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 RNU1-103P-201ENST00000516502 125 ntBASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 RNU1-104P-201ENST00000517280 175 ntBASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 AL391813.2-201ENST00000609113 322 ntBASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 AC090970.3-201ENST00000612566 866 ntBASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 AC011890.2-201ENST00000613393 294 ntBASIC2.68□□□□□ -1.98
CCDC40Q4G0X9 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 SNORA41-201ENST00000384675 132 ntBASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 ZNF90P2-204ENST00000419323 1075 ntBASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 AC098592.1-201ENST00000419352 333 ntBASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 ISCA1P1-201ENST00000426679 387 ntBASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 AC104651.1-201ENST00000427559 735 ntBASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 MED14P1-201ENST00000430517 648 ntBASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 AC098831.1-201ENST00000440661 216 ntBASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 AC233279.1-201ENST00000455300 423 ntBASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 RNU7-26P-201ENST00000458980 63 ntBASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 MTND2P14-201ENST00000482139 351 ntBASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 SCARNA11.3-201ENST00000517276 130 ntBASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 AP006587.4-201ENST00000526053 529 ntBASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 AP003461.1-201ENST00000528866 78 ntBASIC2.67□□□□□ -1.98
CCDC40Q4G0X9 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC2.67□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 134.2 ms