Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RNU6-600P-201ENST00000362524 99 ntBASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 Y_RNA.373-201ENST00000365600 103 ntBASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 Y_RNA.378-201ENST00000365652 113 ntBASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 RNU6-434P-201ENST00000384376 107 ntBASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 RNA5SP424-201ENST00000390988 115 ntBASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 AL590383.1-201ENST00000428602 75 ntBASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 AC004801.2-202ENST00000463559 283 ntBASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 RPL9P32-201ENST00000464118 620 ntBASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 RNU7-30P-201ENST00000516835 62 ntBASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 BTF3P12-201ENST00000519620 469 ntBASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 AC007991.1-201ENST00000522680 631 ntBASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 AC037471.2-201ENST00000564941 598 ntBASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 AC106782.4-201ENST00000568264 210 ntBASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 AC087045.1-201ENST00000605856 382 ntBASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 MIR15A-201ENST00000607334 83 ntBASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 AC103705.1-201ENST00000619013 241 ntBASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 AL359697.1-201ENST00000624879 587 ntBASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 AL034408.1-202ENST00000636088 415 ntBASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 PSMD5-AS1-215ENST00000640622 205 ntBASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 UBE2L2-201ENST00000254302 429 ntBASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 SNORA32.2-201ENST00000384049 122 ntBASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 SNORA5A-201ENST00000384111 134 ntBASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 RNU6-393P-201ENST00000384475 107 ntBASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 RPL21P17-201ENST00000397467 475 ntBASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 POLHP1-201ENST00000411806 470 ntBASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 Z85995.1-201ENST00000415547 335 ntBASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 BX842559.1-201ENST00000419615 532 ntBASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 MTND4P28-201ENST00000426217 387 ntBASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 ANP32BP2-201ENST00000454525 545 ntBASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 VN1R17P-201ENST00000472048 1090 ntBASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 AC012181.1-201ENST00000479895 423 ntBASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 NDUFB4P9-201ENST00000511646 388 ntBASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 TTC39CP1-201ENST00000512513 755 ntBASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 AC112206.3-201ENST00000514578 389 ntBASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 RNU4-49P-201ENST00000516080 140 ntBASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 RNU1-95P-201ENST00000516357 160 ntBASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 RN7SKP83-201ENST00000516512 178 ntBASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 RNU1-128P-201ENST00000516704 160 ntBASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 RNU6-914P-201ENST00000516749 109 ntBASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 RNA5SP468-201ENST00000516782 93 ntBASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 IL7-206ENST00000520269 456 ntTSL 3 BASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 AC004024.1-201ENST00000549244 247 ntBASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 MIR5583-1-201ENST00000580941 59 ntBASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 MIR4742-201ENST00000581069 85 ntBASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 BNIP3P22-201ENST00000593399 556 ntBASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 uc_338.5-201ENST00000611839 155 ntBASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 MIR6075-201ENST00000620782 95 ntBASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
PTCHD3Q3KNS1 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 RNU6-1167P-201ENST00000363227 94 ntBASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 RNU6-1013P-201ENST00000384180 107 ntBASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 RNU6-831P-201ENST00000384548 107 ntBASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 SNORD70.1-201ENST00000391007 85 ntBASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms