Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AL357134.1-201ENST00000445848 426 ntBASIC1.29□□□□□ -2.2
CHD3Q12873 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC1.29□□□□□ -2.2
CHD3Q12873 AC139103.1-201ENST00000534696 1030 ntBASIC1.29□□□□□ -2.2
CHD3Q12873 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC1.29□□□□□ -2.2
CHD3Q12873 AC104229.1-201ENST00000561364 255 ntBASIC1.29□□□□□ -2.2
CHD3Q12873 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC1.29□□□□□ -2.2
CHD3Q12873 BNIP3P4-201ENST00000604946 565 ntBASIC1.29□□□□□ -2.2
CHD3Q12873 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC1.29□□□□□ -2.2
CHD3Q12873 AC011330.2-201ENST00000621680 635 ntBASIC1.29□□□□□ -2.2
CHD3Q12873 MIR3199-2-201ENST00000636243 86 ntBASIC1.29□□□□□ -2.2
CHD3Q12873 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
CHD3Q12873 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
CHD3Q12873 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
CHD3Q12873 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
CHD3Q12873 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
CHD3Q12873 RNU6-543P-201ENST00000362576 108 ntBASIC1.28□□□□□ -2.2
CHD3Q12873 RNU6-1155P-201ENST00000363554 107 ntBASIC1.28□□□□□ -2.2
CHD3Q12873 RNU6-741P-201ENST00000383889 107 ntBASIC1.28□□□□□ -2.2
CHD3Q12873 POLHP1-201ENST00000411806 470 ntBASIC1.28□□□□□ -2.2
CHD3Q12873 MTND4LP14-201ENST00000429447 288 ntBASIC1.28□□□□□ -2.2
CHD3Q12873 RGS5-217ENST00000451759 835 ntTSL 3 BASIC1.28□□□□□ -2.2
CHD3Q12873 AC034222.1-201ENST00000494052 532 ntBASIC1.28□□□□□ -2.2
CHD3Q12873 AC034244.1-201ENST00000507687 207 ntBASIC1.28□□□□□ -2.2
CHD3Q12873 AP005639.2-201ENST00000527592 928 ntBASIC1.28□□□□□ -2.2
CHD3Q12873 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC1.28□□□□□ -2.2
CHD3Q12873 MIR3198-2-201ENST00000577868 80 ntBASIC1.28□□□□□ -2.2
CHD3Q12873 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.28□□□□□ -2.2
CHD3Q12873 DUXAP11-201ENST00000603858 526 ntBASIC1.28□□□□□ -2.2
CHD3Q12873 AC021749.1-201ENST00000604322 607 ntBASIC1.28□□□□□ -2.2
CHD3Q12873 AC079791.1-201ENST00000605356 973 ntBASIC1.28□□□□□ -2.2
CHD3Q12873 SNORD14A-201ENST00000606526 91 ntBASIC1.28□□□□□ -2.2
CHD3Q12873 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC1.28□□□□□ -2.2
CHD3Q12873 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC1.28□□□□□ -2.2
CHD3Q12873 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
CHD3Q12873 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC1.28□□□□□ -2.2
CHD3Q12873 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC1.28□□□□□ -2.2
CHD3Q12873 OR4G11P-202ENST00000642116 1414 ntBASIC1.28□□□□□ -2.2
CHD3Q12873 MIR649-201ENST00000384843 97 ntBASIC1.28□□□□□ -2.2
CHD3Q12873 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
CHD3Q12873 AL121978.1-201ENST00000402778 359 ntBASIC1.28□□□□□ -2.2
CHD3Q12873 MIR1285-1-201ENST00000408593 84 ntBASIC1.28□□□□□ -2.2
CHD3Q12873 MTCO3P46-201ENST00000425787 232 ntBASIC1.28□□□□□ -2.2
CHD3Q12873 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
CHD3Q12873 MTND3P4-201ENST00000453537 303 ntBASIC1.28□□□□□ -2.2
CHD3Q12873 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC1.28□□□□□ -2.2
CHD3Q12873 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC1.28□□□□□ -2.2
CHD3Q12873 CBX3P3-201ENST00000508108 532 ntBASIC1.28□□□□□ -2.2
CHD3Q12873 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC1.28□□□□□ -2.2
CHD3Q12873 AC090821.2-201ENST00000523552 176 ntBASIC1.28□□□□□ -2.2
CHD3Q12873 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC1.28□□□□□ -2.2
CHD3Q12873 NIFKP8-201ENST00000560500 874 ntBASIC1.28□□□□□ -2.2
CHD3Q12873 AC015688.2-201ENST00000584523 262 ntBASIC1.28□□□□□ -2.2
CHD3Q12873 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC1.28□□□□□ -2.2
CHD3Q12873 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.28□□□□□ -2.2
CHD3Q12873 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
CHD3Q12873 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
CHD3Q12873 TMSB4XP8-201ENST00000402089 135 ntBASIC1.27□□□□□ -2.21
CHD3Q12873 MORN2-203ENST00000409131 544 ntTSL 5 BASIC1.27□□□□□ -2.21
CHD3Q12873 TMSB4XP6-201ENST00000415187 135 ntBASIC1.27□□□□□ -2.21
CHD3Q12873 Z85995.1-201ENST00000415547 335 ntBASIC1.27□□□□□ -2.21
CHD3Q12873 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.27□□□□□ -2.21
CHD3Q12873 TMSB4XP1-201ENST00000424567 135 ntBASIC1.27□□□□□ -2.21
CHD3Q12873 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC1.27□□□□□ -2.21
CHD3Q12873 snoU109.4-201ENST00000458953 143 ntBASIC1.27□□□□□ -2.21
CHD3Q12873 MTND4LP3-201ENST00000468320 276 ntBASIC1.27□□□□□ -2.21
CHD3Q12873 AC022447.1-201ENST00000515358 464 ntBASIC1.27□□□□□ -2.21
CHD3Q12873 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.27□□□□□ -2.21
CHD3Q12873 AC124947.2-202ENST00000552735 133 ntBASIC1.27□□□□□ -2.21
CHD3Q12873 MTCYBP27-201ENST00000555160 670 ntBASIC1.27□□□□□ -2.21
CHD3Q12873 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.27□□□□□ -2.21
CHD3Q12873 AC011260.1-201ENST00000578420 472 ntBASIC1.27□□□□□ -2.21
CHD3Q12873 MIR7515-201ENST00000637837 67 ntBASIC1.27□□□□□ -2.21
CHD3Q12873 DBF4P1-201ENST00000412976 1892 ntBASIC1.27□□□□□ -2.21
CHD3Q12873 AL049641.1-201ENST00000441055 1948 ntBASIC1.27□□□□□ -2.21
CHD3Q12873 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.27□□□□□ -2.21
CHD3Q12873 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC1.27□□□□□ -2.21
CHD3Q12873 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC1.27□□□□□ -2.21
CHD3Q12873 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC1.27□□□□□ -2.21
CHD3Q12873 RNU6-955P-201ENST00000410497 104 ntBASIC1.27□□□□□ -2.21
CHD3Q12873 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC1.27□□□□□ -2.21
CHD3Q12873 RPL7L1P10-201ENST00000427790 463 ntBASIC1.27□□□□□ -2.21
CHD3Q12873 AL354695.1-201ENST00000427935 228 ntBASIC1.27□□□□□ -2.21
CHD3Q12873 AL590233.1-201ENST00000430017 456 ntBASIC1.27□□□□□ -2.21
CHD3Q12873 AC090774.1-201ENST00000435925 246 ntBASIC1.27□□□□□ -2.21
CHD3Q12873 RAC1P7-201ENST00000445367 377 ntBASIC1.27□□□□□ -2.21
CHD3Q12873 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC1.27□□□□□ -2.21
CHD3Q12873 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
CHD3Q12873 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC1.27□□□□□ -2.21
CHD3Q12873 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC1.27□□□□□ -2.21
CHD3Q12873 AC026801.1-201ENST00000497178 464 ntBASIC1.27□□□□□ -2.21
CHD3Q12873 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC1.27□□□□□ -2.21
CHD3Q12873 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC1.27□□□□□ -2.21
CHD3Q12873 RNU6-416P-201ENST00000516265 103 ntBASIC1.27□□□□□ -2.21
CHD3Q12873 SCARNA11.3-201ENST00000517276 130 ntBASIC1.27□□□□□ -2.21
CHD3Q12873 MAL2-206ENST00000522187 547 ntTSL 4 BASIC1.27□□□□□ -2.21
CHD3Q12873 AC012414.2-201ENST00000559474 187 ntBASIC1.27□□□□□ -2.21
CHD3Q12873 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC1.27□□□□□ -2.21
CHD3Q12873 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC1.27□□□□□ -2.21
CHD3Q12873 AC105245.1-201ENST00000581934 244 ntBASIC1.27□□□□□ -2.21
CHD3Q12873 AC136443.5-201ENST00000603741 370 ntBASIC1.27□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 113 ms