Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 AC098826.3-201ENST00000603823 466 ntBASIC3.39□□□□□ -1.87
HOXA4Q00056 CYP2C61P-201ENST00000604072 290 ntBASIC3.39□□□□□ -1.87
HOXA4Q00056 AC016925.2-201ENST00000605108 242 ntBASIC3.39□□□□□ -1.87
HOXA4Q00056 AC023043.4-201ENST00000612081 449 ntBASIC3.39□□□□□ -1.87
HOXA4Q00056 AL157817.1-201ENST00000614264 790 ntBASIC3.39□□□□□ -1.87
HOXA4Q00056 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXA4Q00056 AL031601.2-202ENST00000622650 282 ntBASIC3.39□□□□□ -1.87
HOXA4Q00056 AC112484.5-201ENST00000624189 228 ntBASIC3.39□□□□□ -1.87
HOXA4Q00056 AL512643.1-201ENST00000635735 524 ntBASIC3.39□□□□□ -1.87
HOXA4Q00056 AL669831.3-213ENST00000636676 183 ntBASIC3.39□□□□□ -1.87
HOXA4Q00056 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXA4Q00056 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HOXA4Q00056 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.39□□□□□ -1.87
HOXA4Q00056 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.39□□□□□ -1.87
HOXA4Q00056 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
HOXA4Q00056 KPNA2P1-201ENST00000458289 1591 ntBASIC3.38□□□□□ -1.87
HOXA4Q00056 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
HOXA4Q00056 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.38□□□□□ -1.87
HOXA4Q00056 MTND5P10-201ENST00000603719 1809 ntBASIC3.38□□□□□ -1.87
HOXA4Q00056 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
HOXA4Q00056 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
HOXA4Q00056 RNU6-1160P-201ENST00000384546 104 ntBASIC3.38□□□□□ -1.87
HOXA4Q00056 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
HOXA4Q00056 CYCSP33-201ENST00000414485 327 ntBASIC3.38□□□□□ -1.87
HOXA4Q00056 AC004552.1-201ENST00000419089 348 ntBASIC3.38□□□□□ -1.87
HOXA4Q00056 ATG3P1-201ENST00000419507 911 ntBASIC3.38□□□□□ -1.87
HOXA4Q00056 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXA4Q00056 AL691449.1-201ENST00000426570 421 ntBASIC3.38□□□□□ -1.87
HOXA4Q00056 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.38□□□□□ -1.87
HOXA4Q00056 USP9YP7-201ENST00000436723 430 ntBASIC3.38□□□□□ -1.87
HOXA4Q00056 AL359672.1-201ENST00000442302 409 ntBASIC3.38□□□□□ -1.87
HOXA4Q00056 AL137792.2-201ENST00000443484 235 ntBASIC3.38□□□□□ -1.87
HOXA4Q00056 RANP8-201ENST00000444720 713 ntBASIC3.38□□□□□ -1.87
HOXA4Q00056 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXA4Q00056 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXA4Q00056 USP9YP32-201ENST00000452432 430 ntBASIC3.38□□□□□ -1.87
HOXA4Q00056 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.38□□□□□ -1.87
HOXA4Q00056 MIR2053-201ENST00000459295 91 ntBASIC3.38□□□□□ -1.87
HOXA4Q00056 AC010469.1-201ENST00000463864 576 ntBASIC3.38□□□□□ -1.87
HOXA4Q00056 RPS26P3-201ENST00000470205 348 ntBASIC3.38□□□□□ -1.87
HOXA4Q00056 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.38□□□□□ -1.87
HOXA4Q00056 AC090543.2-201ENST00000483963 348 ntBASIC3.38□□□□□ -1.87
HOXA4Q00056 AC004057.1-201ENST00000485827 348 ntBASIC3.38□□□□□ -1.87
HOXA4Q00056 RPS15AP34-201ENST00000487776 387 ntBASIC3.38□□□□□ -1.87
HOXA4Q00056 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC3.38□□□□□ -1.87
HOXA4Q00056 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HOXA4Q00056 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXA4Q00056 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.38□□□□□ -1.87
HOXA4Q00056 AC116337.1-201ENST00000509680 687 ntBASIC3.38□□□□□ -1.87
HOXA4Q00056 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXA4Q00056 SNRPGP18-201ENST00000553000 214 ntBASIC3.38□□□□□ -1.87
HOXA4Q00056 AC007224.1-201ENST00000564410 144 ntBASIC3.38□□□□□ -1.87
HOXA4Q00056 AC136624.4-201ENST00000573044 370 ntBASIC3.38□□□□□ -1.87
HOXA4Q00056 MIR548AC-201ENST00000585049 88 ntBASIC3.38□□□□□ -1.87
HOXA4Q00056 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXA4Q00056 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC3.38□□□□□ -1.87
HOXA4Q00056 AL161798.1-201ENST00000604630 131 ntBASIC3.38□□□□□ -1.87
HOXA4Q00056 AC015813.4-201ENST00000610469 179 ntBASIC3.38□□□□□ -1.87
HOXA4Q00056 MIR6875-201ENST00000617506 72 ntBASIC3.38□□□□□ -1.87
HOXA4Q00056 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.38□□□□□ -1.87
HOXA4Q00056 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC3.38□□□□□ -1.87
HOXA4Q00056 AC068254.2-201ENST00000623938 3577 ntBASIC3.38□□□□□ -1.87
HOXA4Q00056 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HOXA4Q00056 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC3.38□□□□□ -1.87
HOXA4Q00056 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HOXA4Q00056 AC010733.2-201ENST00000589496 5702 ntBASIC3.38□□□□□ -1.87
HOXA4Q00056 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
HOXA4Q00056 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
HOXA4Q00056 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.37□□□□□ -1.87
HOXA4Q00056 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXA4Q00056 Y_RNA.422-201ENST00000384054 114 ntBASIC3.37□□□□□ -1.87
HOXA4Q00056 RNU6-1050P-201ENST00000410388 107 ntBASIC3.37□□□□□ -1.87
HOXA4Q00056 RNA5SP104-201ENST00000410989 118 ntBASIC3.37□□□□□ -1.87
HOXA4Q00056 AL160275.2-201ENST00000412010 394 ntBASIC3.37□□□□□ -1.87
HOXA4Q00056 AC108032.1-201ENST00000416706 207 ntBASIC3.37□□□□□ -1.87
HOXA4Q00056 ATP5HP2-201ENST00000433885 485 ntBASIC3.37□□□□□ -1.87
HOXA4Q00056 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.37□□□□□ -1.87
HOXA4Q00056 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXA4Q00056 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXA4Q00056 snoU13.4-201ENST00000458916 104 ntBASIC3.37□□□□□ -1.87
HOXA4Q00056 AL132838.2-201ENST00000492041 314 ntBASIC3.37□□□□□ -1.87
HOXA4Q00056 AC022493.1-201ENST00000492984 337 ntBASIC3.37□□□□□ -1.87
HOXA4Q00056 AC097473.1-201ENST00000508142 408 ntBASIC3.37□□□□□ -1.87
HOXA4Q00056 AC026782.1-201ENST00000512952 449 ntBASIC3.37□□□□□ -1.87
HOXA4Q00056 SMURF2P1-201ENST00000514992 481 ntBASIC3.37□□□□□ -1.87
HOXA4Q00056 Y_RNA.670-201ENST00000516255 105 ntBASIC3.37□□□□□ -1.87
HOXA4Q00056 RNU6-1016P-201ENST00000516689 94 ntBASIC3.37□□□□□ -1.87
HOXA4Q00056 IGKV2-38-201ENST00000517443 247 ntBASIC3.37□□□□□ -1.87
HOXA4Q00056 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.37□□□□□ -1.87
HOXA4Q00056 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXA4Q00056 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXA4Q00056 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
HOXA4Q00056 NUTF2P8-201ENST00000604593 363 ntBASIC3.37□□□□□ -1.87
HOXA4Q00056 AC091167.4-201ENST00000605079 184 ntBASIC3.37□□□□□ -1.87
HOXA4Q00056 AP000654.2-201ENST00000605633 586 ntBASIC3.37□□□□□ -1.87
HOXA4Q00056 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXA4Q00056 AL355802.3-201ENST00000607571 545 ntBASIC3.37□□□□□ -1.87
HOXA4Q00056 AC009229.3-201ENST00000608056 282 ntBASIC3.37□□□□□ -1.87
HOXA4Q00056 SNORD39.4-201ENST00000620099 78 ntBASIC3.37□□□□□ -1.87
HOXA4Q00056 MIR6500-201ENST00000622700 86 ntBASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms