Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC1.12□□□□□ -2.23
FOXA3P55318 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC1.12□□□□□ -2.23
FOXA3P55318 SSXP1-201ENST00000453640 473 ntBASIC1.12□□□□□ -2.23
FOXA3P55318 MTCYBP35-201ENST00000503630 1137 ntBASIC1.12□□□□□ -2.23
FOXA3P55318 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC1.12□□□□□ -2.23
FOXA3P55318 RNA5SP61-201ENST00000516453 100 ntBASIC1.12□□□□□ -2.23
FOXA3P55318 RNU6-250P-201ENST00000516958 103 ntBASIC1.12□□□□□ -2.23
FOXA3P55318 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC1.12□□□□□ -2.23
FOXA3P55318 NAP1L1P1-201ENST00000524793 1063 ntBASIC1.12□□□□□ -2.23
FOXA3P55318 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC1.12□□□□□ -2.23
FOXA3P55318 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
FOXA3P55318 LARP7P2-201ENST00000575306 125 ntBASIC1.12□□□□□ -2.23
FOXA3P55318 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC1.12□□□□□ -2.23
FOXA3P55318 BNIP3P24-201ENST00000593398 557 ntBASIC1.12□□□□□ -2.23
FOXA3P55318 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC1.12□□□□□ -2.23
FOXA3P55318 AF131215.7-201ENST00000602443 707 ntBASIC1.12□□□□□ -2.23
FOXA3P55318 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC1.12□□□□□ -2.23
FOXA3P55318 AC104763.2-201ENST00000604179 382 ntBASIC1.12□□□□□ -2.23
FOXA3P55318 AC004853.1-201ENST00000604902 698 ntBASIC1.12□□□□□ -2.23
FOXA3P55318 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC1.12□□□□□ -2.23
FOXA3P55318 AC093673.2-201ENST00000609674 331 ntBASIC1.12□□□□□ -2.23
FOXA3P55318 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.12□□□□□ -2.23
FOXA3P55318 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC1.12□□□□□ -2.23
FOXA3P55318 AC007490.1-201ENST00000624321 703 ntBASIC1.12□□□□□ -2.23
FOXA3P55318 AC026634.1-201ENST00000634369 198 ntBASIC1.12□□□□□ -2.23
FOXA3P55318 AC006026.1-201ENST00000444025 1803 ntBASIC1.12□□□□□ -2.23
FOXA3P55318 MTCO2P31-201ENST00000402702 684 ntBASIC1.11□□□□□ -2.23
FOXA3P55318 RN7SKP192-201ENST00000411291 327 ntBASIC1.11□□□□□ -2.23
FOXA3P55318 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC1.11□□□□□ -2.23
FOXA3P55318 HMGB1P18-201ENST00000438801 619 ntBASIC1.11□□□□□ -2.23
FOXA3P55318 AC118469.1-201ENST00000442943 488 ntBASIC1.11□□□□□ -2.23
FOXA3P55318 RPS29P23-201ENST00000458635 123 ntBASIC1.11□□□□□ -2.23
FOXA3P55318 CKS1BP2-201ENST00000497342 240 ntBASIC1.11□□□□□ -2.23
FOXA3P55318 AC098799.1-201ENST00000504752 800 ntBASIC1.11□□□□□ -2.23
FOXA3P55318 RNU6-885P-201ENST00000516607 104 ntBASIC1.11□□□□□ -2.23
FOXA3P55318 DUXAP5-201ENST00000529668 529 ntBASIC1.11□□□□□ -2.23
FOXA3P55318 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC1.11□□□□□ -2.23
FOXA3P55318 NIFKP8-201ENST00000560500 874 ntBASIC1.11□□□□□ -2.23
FOXA3P55318 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC1.11□□□□□ -2.23
FOXA3P55318 MIR4648-201ENST00000580107 72 ntBASIC1.11□□□□□ -2.23
FOXA3P55318 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC1.11□□□□□ -2.23
FOXA3P55318 AC016925.2-201ENST00000605108 242 ntBASIC1.11□□□□□ -2.23
FOXA3P55318 MIR502-201ENST00000606349 86 ntBASIC1.11□□□□□ -2.23
FOXA3P55318 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC1.11□□□□□ -2.23
FOXA3P55318 MIR6852-201ENST00000621699 66 ntBASIC1.11□□□□□ -2.23
FOXA3P55318 AC104820.1-201ENST00000624183 307 ntBASIC1.11□□□□□ -2.23
FOXA3P55318 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
FOXA3P55318 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
FOXA3P55318 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.1□□□□□ -2.23
FOXA3P55318 AL356292.1-201ENST00000283110 373 ntBASIC1.1□□□□□ -2.23
FOXA3P55318 MIR583-201ENST00000384846 75 ntBASIC1.1□□□□□ -2.23
FOXA3P55318 MIR95-201ENST00000385072 81 ntBASIC1.1□□□□□ -2.23
FOXA3P55318 MIR634-201ENST00000385208 97 ntBASIC1.1□□□□□ -2.23
FOXA3P55318 RSL24D1P4-201ENST00000400938 484 ntBASIC1.1□□□□□ -2.23
FOXA3P55318 AL449283.1-202ENST00000418249 604 ntBASIC1.1□□□□□ -2.23
FOXA3P55318 AL358453.1-201ENST00000422522 250 ntBASIC1.1□□□□□ -2.23
FOXA3P55318 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC1.1□□□□□ -2.23
FOXA3P55318 MTCO3P46-201ENST00000425787 232 ntBASIC1.1□□□□□ -2.23
FOXA3P55318 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC1.1□□□□□ -2.23
FOXA3P55318 MTND2P5-201ENST00000432656 1006 ntBASIC1.1□□□□□ -2.23
FOXA3P55318 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC1.1□□□□□ -2.23
FOXA3P55318 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.1□□□□□ -2.23
FOXA3P55318 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC1.1□□□□□ -2.23
FOXA3P55318 RPL22P13-201ENST00000493291 347 ntBASIC1.1□□□□□ -2.23
FOXA3P55318 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC1.1□□□□□ -2.23
FOXA3P55318 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC1.1□□□□□ -2.23
FOXA3P55318 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC1.1□□□□□ -2.23
FOXA3P55318 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC1.1□□□□□ -2.23
FOXA3P55318 AL160236.1-201ENST00000556317 195 ntBASIC1.1□□□□□ -2.23
FOXA3P55318 AC026271.5-201ENST00000577873 130 ntBASIC1.1□□□□□ -2.23
FOXA3P55318 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.1□□□□□ -2.23
FOXA3P55318 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC1.1□□□□□ -2.23
FOXA3P55318 MTCYBP22-201ENST00000603788 447 ntBASIC1.1□□□□□ -2.23
FOXA3P55318 AL355802.4-201ENST00000607635 548 ntBASIC1.1□□□□□ -2.23
FOXA3P55318 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC1.1□□□□□ -2.23
FOXA3P55318 AC004009.2-201ENST00000623016 728 ntBASIC1.1□□□□□ -2.23
FOXA3P55318 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.1□□□□□ -2.23
FOXA3P55318 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
FOXA3P55318 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
FOXA3P55318 SUCLA2P2-201ENST00000417269 1309 ntBASIC1.1□□□□□ -2.23
FOXA3P55318 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC1.09□□□□□ -2.23
FOXA3P55318 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.09□□□□□ -2.23
FOXA3P55318 U8.2-201ENST00000363156 134 ntBASIC1.09□□□□□ -2.23
FOXA3P55318 SNORA25B-201ENST00000365507 128 ntBASIC1.09□□□□□ -2.23
FOXA3P55318 RNU6-338P-201ENST00000383888 105 ntBASIC1.09□□□□□ -2.23
FOXA3P55318 MIR517C-201ENST00000385103 95 ntBASIC1.09□□□□□ -2.23
FOXA3P55318 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.09□□□□□ -2.23
FOXA3P55318 RNU6-1140P-201ENST00000410517 106 ntBASIC1.09□□□□□ -2.23
FOXA3P55318 AL592310.1-201ENST00000414330 671 ntBASIC1.09□□□□□ -2.23
FOXA3P55318 OFD1P2Y-201ENST00000421895 1149 ntBASIC1.09□□□□□ -2.23
FOXA3P55318 SLC44A3-AS1-205ENST00000424505 612 ntBASIC1.09□□□□□ -2.23
FOXA3P55318 AL035407.1-201ENST00000429211 571 ntBASIC1.09□□□□□ -2.23
FOXA3P55318 MTCO1P53-201ENST00000441633 699 ntBASIC1.09□□□□□ -2.23
FOXA3P55318 AC018437.1-201ENST00000492214 406 ntBASIC1.09□□□□□ -2.23
FOXA3P55318 AC104564.1-201ENST00000493028 407 ntBASIC1.09□□□□□ -2.23
FOXA3P55318 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC1.09□□□□□ -2.23
FOXA3P55318 AC114801.2-201ENST00000503825 781 ntBASIC1.09□□□□□ -2.23
FOXA3P55318 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC1.09□□□□□ -2.23
FOXA3P55318 AC010486.1-201ENST00000511793 424 ntBASIC1.09□□□□□ -2.23
FOXA3P55318 SMURF2P1-201ENST00000514992 481 ntBASIC1.09□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 164.4 ms