Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXD9P28356 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.55□□□□□ -1.84
HOXD9P28356 MIR4738-201ENST00000579134 87 ntBASIC3.55□□□□□ -1.84
HOXD9P28356 AC024619.4-201ENST00000580924 316 ntBASIC3.55□□□□□ -1.84
HOXD9P28356 AC012443.1-201ENST00000605605 231 ntBASIC3.55□□□□□ -1.84
HOXD9P28356 AL022345.1-201ENST00000607292 135 ntBASIC3.55□□□□□ -1.84
HOXD9P28356 Y_RNA.812-201ENST00000610788 101 ntBASIC3.55□□□□□ -1.84
HOXD9P28356 AC104237.2-201ENST00000612456 443 ntBASIC3.55□□□□□ -1.84
HOXD9P28356 Y_RNA.784-201ENST00000613803 101 ntBASIC3.55□□□□□ -1.84
HOXD9P28356 Y_RNA.787-201ENST00000616522 101 ntBASIC3.55□□□□□ -1.84
HOXD9P28356 Y_RNA.780-201ENST00000617336 101 ntBASIC3.55□□□□□ -1.84
HOXD9P28356 Y_RNA.801-201ENST00000619005 101 ntBASIC3.55□□□□□ -1.84
HOXD9P28356 USP12-203ENST00000620323 349 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXD9P28356 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.55□□□□□ -1.84
HOXD9P28356 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXD9P28356 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXD9P28356 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXD9P28356 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXD9P28356 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXD9P28356 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXD9P28356 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.55□□□□□ -1.84
HOXD9P28356 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXD9P28356 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HOXD9P28356 AL356274.2-201ENST00000624379 3752 ntBASIC3.55□□□□□ -1.84
HOXD9P28356 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXD9P28356 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.55□□□□□ -1.84
HOXD9P28356 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.54□□□□□ -1.84
HOXD9P28356 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
HOXD9P28356 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.54□□□□□ -1.84
HOXD9P28356 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.54□□□□□ -1.84
HOXD9P28356 RNU6-179P-201ENST00000363350 107 ntBASIC3.54□□□□□ -1.84
HOXD9P28356 RNU6-1284P-201ENST00000363701 100 ntBASIC3.54□□□□□ -1.84
HOXD9P28356 Y_RNA.326-201ENST00000365176 113 ntBASIC3.54□□□□□ -1.84
HOXD9P28356 RNU4-66P-201ENST00000365199 138 ntBASIC3.54□□□□□ -1.84
HOXD9P28356 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXD9P28356 Y_RNA.394-201ENST00000383942 103 ntBASIC3.54□□□□□ -1.84
HOXD9P28356 RNU6-1074P-201ENST00000383995 104 ntBASIC3.54□□□□□ -1.84
HOXD9P28356 Y_RNA.419-201ENST00000384041 102 ntBASIC3.54□□□□□ -1.84
HOXD9P28356 AL606923.1-201ENST00000406616 190 ntBASIC3.54□□□□□ -1.84
HOXD9P28356 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC3.54□□□□□ -1.84
HOXD9P28356 OR6C66P-201ENST00000414917 930 ntBASIC3.54□□□□□ -1.84
HOXD9P28356 AC099677.1-201ENST00000420575 175 ntBASIC3.54□□□□□ -1.84
HOXD9P28356 AL121877.1-201ENST00000453704 622 ntBASIC3.54□□□□□ -1.84
HOXD9P28356 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.54□□□□□ -1.84
HOXD9P28356 AL590639.1-201ENST00000456484 337 ntBASIC3.54□□□□□ -1.84
HOXD9P28356 snoU13.4-201ENST00000458916 104 ntBASIC3.54□□□□□ -1.84
HOXD9P28356 RN7SL601P-201ENST00000471221 293 ntBASIC3.54□□□□□ -1.84
HOXD9P28356 RPS27AP1-201ENST00000475545 471 ntBASIC3.54□□□□□ -1.84
HOXD9P28356 AP001086.1-201ENST00000494882 321 ntBASIC3.54□□□□□ -1.84
HOXD9P28356 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC3.54□□□□□ -1.84
HOXD9P28356 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.54□□□□□ -1.84
HOXD9P28356 RNU6-1095P-201ENST00000516148 108 ntBASIC3.54□□□□□ -1.84
HOXD9P28356 HMGN1P28-201ENST00000521340 364 ntBASIC3.54□□□□□ -1.84
HOXD9P28356 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXD9P28356 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.54□□□□□ -1.84
HOXD9P28356 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.54□□□□□ -1.84
HOXD9P28356 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC3.54□□□□□ -1.84
HOXD9P28356 AC006254.3-201ENST00000603353 884 ntBASIC3.54□□□□□ -1.84
HOXD9P28356 AL022099.1-201ENST00000604551 712 ntBASIC3.54□□□□□ -1.84
HOXD9P28356 AL031176.1-201ENST00000604554 466 ntBASIC3.54□□□□□ -1.84
HOXD9P28356 AL161756.2-201ENST00000604597 246 ntBASIC3.54□□□□□ -1.84
HOXD9P28356 AL133255.1-201ENST00000606374 441 ntBASIC3.54□□□□□ -1.84
HOXD9P28356 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.54□□□□□ -1.84
HOXD9P28356 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.54□□□□□ -1.84
HOXD9P28356 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC3.54□□□□□ -1.84
HOXD9P28356 AL133383.2-201ENST00000622958 2336 ntBASIC3.54□□□□□ -1.84
HOXD9P28356 MTCO1P9-201ENST00000505577 1534 ntBASIC3.54□□□□□ -1.84
HOXD9P28356 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
HOXD9P28356 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
HOXD9P28356 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.54□□□□□ -1.84
HOXD9P28356 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXD9P28356 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXD9P28356 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXD9P28356 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXD9P28356 AL359634.1-202ENST00000404721 284 ntBASIC3.53□□□□□ -1.84
HOXD9P28356 AL590004.1-201ENST00000405321 300 ntBASIC3.53□□□□□ -1.84
HOXD9P28356 BX323014.1-201ENST00000412876 237 ntBASIC3.53□□□□□ -1.84
HOXD9P28356 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC3.53□□□□□ -1.84
HOXD9P28356 NDUFB4P5-201ENST00000415445 361 ntBASIC3.53□□□□□ -1.84
HOXD9P28356 AL451054.2-201ENST00000420896 202 ntBASIC3.53□□□□□ -1.84
HOXD9P28356 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXD9P28356 AC018630.2-202ENST00000422992 927 ntBASIC3.53□□□□□ -1.84
HOXD9P28356 AC017083.1-201ENST00000428093 483 ntBASIC3.53□□□□□ -1.84
HOXD9P28356 AC005300.1-201ENST00000428401 373 ntBASIC3.53□□□□□ -1.84
HOXD9P28356 AC005326.1-201ENST00000429197 123 ntBASIC3.53□□□□□ -1.84
HOXD9P28356 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC3.53□□□□□ -1.84
HOXD9P28356 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXD9P28356 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXD9P28356 SNRPFP3-201ENST00000457792 225 ntBASIC3.53□□□□□ -1.84
HOXD9P28356 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
HOXD9P28356 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
HOXD9P28356 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.53□□□□□ -1.84
HOXD9P28356 VWA8P1-201ENST00000510889 176 ntBASIC3.53□□□□□ -1.84
HOXD9P28356 RNU6-1092P-201ENST00000516955 87 ntBASIC3.53□□□□□ -1.84
HOXD9P28356 RN7SKP289-201ENST00000517244 295 ntBASIC3.53□□□□□ -1.84
HOXD9P28356 RPL7P20-201ENST00000520308 745 ntBASIC3.53□□□□□ -1.84
HOXD9P28356 AC103783.1-201ENST00000520506 373 ntBASIC3.53□□□□□ -1.84
HOXD9P28356 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXD9P28356 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.53□□□□□ -1.84
HOXD9P28356 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms