Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 RPL35AP22-201ENST00000436855 335 ntBASIC1.45□□□□□ -2.18
HLA-DMBP28068 AC004383.1-201ENST00000438135 289 ntBASIC1.45□□□□□ -2.18
HLA-DMBP28068 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC1.45□□□□□ -2.18
HLA-DMBP28068 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.45□□□□□ -2.18
HLA-DMBP28068 AL096829.2-201ENST00000446582 742 ntBASIC1.45□□□□□ -2.18
HLA-DMBP28068 AC002381.1-201ENST00000447049 280 ntBASIC1.45□□□□□ -2.18
HLA-DMBP28068 AL136380.1-201ENST00000447970 162 ntBASIC1.45□□□□□ -2.18
HLA-DMBP28068 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC1.45□□□□□ -2.18
HLA-DMBP28068 MTND1P9-201ENST00000453775 944 ntBASIC1.45□□□□□ -2.18
HLA-DMBP28068 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC1.45□□□□□ -2.18
HLA-DMBP28068 snoU13.8-201ENST00000458890 104 ntBASIC1.45□□□□□ -2.18
HLA-DMBP28068 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC1.45□□□□□ -2.18
HLA-DMBP28068 AC008526.1-201ENST00000509149 338 ntBASIC1.45□□□□□ -2.18
HLA-DMBP28068 HMGN1P28-201ENST00000521340 364 ntBASIC1.45□□□□□ -2.18
HLA-DMBP28068 AC118273.2-201ENST00000532092 465 ntBASIC1.45□□□□□ -2.18
HLA-DMBP28068 NACAP3-201ENST00000552100 481 ntBASIC1.45□□□□□ -2.18
HLA-DMBP28068 HIGD1AP17-201ENST00000554576 276 ntBASIC1.45□□□□□ -2.18
HLA-DMBP28068 AC024619.4-201ENST00000580924 316 ntBASIC1.45□□□□□ -2.18
HLA-DMBP28068 AC002545.1-201ENST00000592511 181 ntBASIC1.45□□□□□ -2.18
HLA-DMBP28068 AL109918.3-201ENST00000603072 338 ntBASIC1.45□□□□□ -2.18
HLA-DMBP28068 RPP40P2-201ENST00000603596 712 ntBASIC1.45□□□□□ -2.18
HLA-DMBP28068 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC1.45□□□□□ -2.18
HLA-DMBP28068 AL627230.6-201ENST00000611129 280 ntBASIC1.45□□□□□ -2.18
HLA-DMBP28068 AC243773.3-201ENST00000613270 256 ntBASIC1.45□□□□□ -2.18
HLA-DMBP28068 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC1.45□□□□□ -2.18
HLA-DMBP28068 AC244517.12-201ENST00000623581 663 ntBASIC1.45□□□□□ -2.18
HLA-DMBP28068 AC092881.1-201ENST00000638218 2733 ntBASIC1.45□□□□□ -2.18
HLA-DMBP28068 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.44□□□□□ -2.18
HLA-DMBP28068 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
HLA-DMBP28068 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.44□□□□□ -2.18
HLA-DMBP28068 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC1.44□□□□□ -2.18
HLA-DMBP28068 RNU6-343P-201ENST00000364709 104 ntBASIC1.44□□□□□ -2.18
HLA-DMBP28068 RNU6-754P-201ENST00000391166 107 ntBASIC1.44□□□□□ -2.18
HLA-DMBP28068 RNA5SP489-201ENST00000410986 109 ntBASIC1.44□□□□□ -2.18
HLA-DMBP28068 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC1.44□□□□□ -2.18
HLA-DMBP28068 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC1.44□□□□□ -2.18
HLA-DMBP28068 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC1.44□□□□□ -2.18
HLA-DMBP28068 USP9YP22-201ENST00000438971 294 ntBASIC1.44□□□□□ -2.18
HLA-DMBP28068 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC1.44□□□□□ -2.18
HLA-DMBP28068 FTH1P25-201ENST00000447665 469 ntBASIC1.44□□□□□ -2.18
HLA-DMBP28068 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC1.44□□□□□ -2.18
HLA-DMBP28068 AC244505.3-201ENST00000454598 187 ntBASIC1.44□□□□□ -2.18
HLA-DMBP28068 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.44□□□□□ -2.18
HLA-DMBP28068 PMCHL2-203ENST00000457791 237 ntBASIC1.44□□□□□ -2.18
HLA-DMBP28068 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC1.44□□□□□ -2.18
HLA-DMBP28068 HMGB1P36-201ENST00000487709 576 ntBASIC1.44□□□□□ -2.18
HLA-DMBP28068 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
HLA-DMBP28068 AC026414.1-201ENST00000504046 698 ntBASIC1.44□□□□□ -2.18
HLA-DMBP28068 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC1.44□□□□□ -2.18
HLA-DMBP28068 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC1.44□□□□□ -2.18
HLA-DMBP28068 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC1.44□□□□□ -2.18
HLA-DMBP28068 AC116337.1-201ENST00000509680 687 ntBASIC1.44□□□□□ -2.18
HLA-DMBP28068 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC1.44□□□□□ -2.18
HLA-DMBP28068 AF213884.2-201ENST00000510417 903 ntBASIC1.44□□□□□ -2.18
HLA-DMBP28068 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC1.44□□□□□ -2.18
HLA-DMBP28068 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC1.44□□□□□ -2.18
HLA-DMBP28068 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC1.44□□□□□ -2.18
HLA-DMBP28068 CBX3P7-201ENST00000532876 502 ntBASIC1.44□□□□□ -2.18
HLA-DMBP28068 DEFB122-202ENST00000569013 197 ntBASIC1.44□□□□□ -2.18
HLA-DMBP28068 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC1.44□□□□□ -2.18
HLA-DMBP28068 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
HLA-DMBP28068 AP001269.3-201ENST00000588718 329 ntBASIC1.44□□□□□ -2.18
HLA-DMBP28068 AC098483.2-201ENST00000603158 454 ntBASIC1.44□□□□□ -2.18
HLA-DMBP28068 AL583856.2-201ENST00000606298 543 ntBASIC1.44□□□□□ -2.18
HLA-DMBP28068 AL121652.1-201ENST00000608851 448 ntBASIC1.44□□□□□ -2.18
HLA-DMBP28068 AC103710.2-201ENST00000609912 942 ntBASIC1.44□□□□□ -2.18
HLA-DMBP28068 AC010133.1-201ENST00000615809 842 ntBASIC1.44□□□□□ -2.18
HLA-DMBP28068 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.44□□□□□ -2.18
HLA-DMBP28068 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC1.44□□□□□ -2.18
HLA-DMBP28068 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC1.44□□□□□ -2.18
HLA-DMBP28068 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
HLA-DMBP28068 AL589826.1-201ENST00000340697 249 ntBASIC1.43□□□□□ -2.18
HLA-DMBP28068 RN7SKP158-201ENST00000410453 326 ntBASIC1.43□□□□□ -2.18
HLA-DMBP28068 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.43□□□□□ -2.18
HLA-DMBP28068 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC1.43□□□□□ -2.18
HLA-DMBP28068 RPL31P63-201ENST00000422565 375 ntBASIC1.43□□□□□ -2.18
HLA-DMBP28068 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC1.43□□□□□ -2.18
HLA-DMBP28068 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC1.43□□□□□ -2.18
HLA-DMBP28068 MTCO1P3-201ENST00000429327 192 ntBASIC1.43□□□□□ -2.18
HLA-DMBP28068 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC1.43□□□□□ -2.18
HLA-DMBP28068 AL591806.2-201ENST00000433122 173 ntBASIC1.43□□□□□ -2.18
HLA-DMBP28068 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC1.43□□□□□ -2.18
HLA-DMBP28068 AC003989.2-201ENST00000440224 169 ntBASIC1.43□□□□□ -2.18
HLA-DMBP28068 ARPC3P5-201ENST00000448802 534 ntBASIC1.43□□□□□ -2.18
HLA-DMBP28068 AC079776.3-201ENST00000450665 370 ntBASIC1.43□□□□□ -2.18
HLA-DMBP28068 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC1.43□□□□□ -2.18
HLA-DMBP28068 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC1.43□□□□□ -2.18
HLA-DMBP28068 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
HLA-DMBP28068 RNU6-362P-201ENST00000516736 90 ntBASIC1.43□□□□□ -2.18
HLA-DMBP28068 SNORA31.23-201ENST00000517219 133 ntBASIC1.43□□□□□ -2.18
HLA-DMBP28068 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.43□□□□□ -2.18
HLA-DMBP28068 AP003497.1-201ENST00000528472 562 ntBASIC1.43□□□□□ -2.18
HLA-DMBP28068 CYCSP2-201ENST00000558168 301 ntBASIC1.43□□□□□ -2.18
HLA-DMBP28068 AC012435.1-202ENST00000568772 240 ntBASIC1.43□□□□□ -2.18
HLA-DMBP28068 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC1.43□□□□□ -2.18
HLA-DMBP28068 MIR4287-201ENST00000579398 78 ntBASIC1.43□□□□□ -2.18
HLA-DMBP28068 AC007229.1-201ENST00000590455 412 ntBASIC1.43□□□□□ -2.18
HLA-DMBP28068 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC1.43□□□□□ -2.18
HLA-DMBP28068 AC068276.1-201ENST00000605793 379 ntBASIC1.43□□□□□ -2.18
HLA-DMBP28068 AP005229.2-201ENST00000609980 697 ntBASIC1.43□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 127 ms