Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 LIAS-206ENST00000513731 826 ntTSL 5 BASIC4.41□□□□□ -1.7
COL6A1P12109 SMURF2P1-201ENST00000514992 481 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 RNU6-1046P-201ENST00000516538 107 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 RNU6-256P-201ENST00000516747 97 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 RNU6-1092P-201ENST00000516955 87 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 Y_RNA.720-201ENST00000517166 92 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 RNA5SP454-201ENST00000517231 127 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC4.41□□□□□ -1.7
COL6A1P12109 AC090136.1-201ENST00000520009 240 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 AC093012.1-202ENST00000549403 582 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.41□□□□□ -1.7
COL6A1P12109 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC4.41□□□□□ -1.7
COL6A1P12109 AC092747.3-201ENST00000603769 301 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 AL031176.1-201ENST00000604554 466 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 AC012443.1-201ENST00000605605 231 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 AC022893.3-201ENST00000607665 437 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 AL360181.4-201ENST00000621752 134 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 uc_338.22-201ENST00000622722 187 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 AC091925.1-201ENST00000623204 462 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.41□□□□□ -1.7
COL6A1P12109 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL6A1P12109 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL6A1P12109 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL6A1P12109 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
COL6A1P12109 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.4□□□□□ -1.7
COL6A1P12109 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.7
COL6A1P12109 TPTE2P4-201ENST00000258589 1605 ntBASIC4.4□□□□□ -1.7
COL6A1P12109 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
COL6A1P12109 RNU6-1252P-201ENST00000363054 104 ntBASIC4.4□□□□□ -1.71
COL6A1P12109 Y_RNA.167-201ENST00000363735 109 ntBASIC4.4□□□□□ -1.71
COL6A1P12109 RNU6-960P-201ENST00000364056 120 ntBASIC4.4□□□□□ -1.71
COL6A1P12109 RNU6-61P-201ENST00000365528 109 ntBASIC4.4□□□□□ -1.71
COL6A1P12109 RNU6-196P-201ENST00000384315 107 ntBASIC4.4□□□□□ -1.71
COL6A1P12109 RNU6-328P-201ENST00000390887 106 ntBASIC4.4□□□□□ -1.71
COL6A1P12109 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC4.4□□□□□ -1.71
COL6A1P12109 ACTR3BP6-201ENST00000422332 1241 ntBASIC4.4□□□□□ -1.71
COL6A1P12109 RPL7P46-201ENST00000425129 740 ntBASIC4.4□□□□□ -1.71
COL6A1P12109 CALM2P2-201ENST00000428512 440 ntBASIC4.4□□□□□ -1.71
COL6A1P12109 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC4.4□□□□□ -1.71
COL6A1P12109 AC005019.1-201ENST00000436455 431 ntBASIC4.4□□□□□ -1.71
COL6A1P12109 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC4.4□□□□□ -1.71
COL6A1P12109 RPL32P28-201ENST00000443577 397 ntBASIC4.4□□□□□ -1.71
COL6A1P12109 HMGB3P22-202ENST00000451823 572 ntBASIC4.4□□□□□ -1.71
COL6A1P12109 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC4.4□□□□□ -1.71
COL6A1P12109 RPL23AP31-201ENST00000456160 467 ntBASIC4.4□□□□□ -1.71
COL6A1P12109 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC4.4□□□□□ -1.71
COL6A1P12109 RPS27AP1-201ENST00000475545 471 ntBASIC4.4□□□□□ -1.71
COL6A1P12109 RPS29P2-201ENST00000479278 136 ntBASIC4.4□□□□□ -1.71
COL6A1P12109 RN7SL271P-201ENST00000487601 295 ntBASIC4.4□□□□□ -1.71
COL6A1P12109 UBE2Q2P9-201ENST00000490086 202 ntBASIC4.4□□□□□ -1.71
COL6A1P12109 RPS27P27-201ENST00000498779 255 ntBASIC4.4□□□□□ -1.71
COL6A1P12109 SRP72-202ENST00000504757 745 ntTSL 2 BASIC4.4□□□□□ -1.71
COL6A1P12109 MTCYBP40-201ENST00000509390 1135 ntBASIC4.4□□□□□ -1.71
COL6A1P12109 AC021146.3-201ENST00000511911 260 ntBASIC4.4□□□□□ -1.71
COL6A1P12109 RNU1-61P-201ENST00000516107 151 ntBASIC4.4□□□□□ -1.71
COL6A1P12109 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC4.4□□□□□ -1.71
COL6A1P12109 DNAJC8P1-201ENST00000554535 372 ntBASIC4.4□□□□□ -1.71
COL6A1P12109 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC4.4□□□□□ -1.71
COL6A1P12109 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.4□□□□□ -1.71
COL6A1P12109 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC4.4□□□□□ -1.71
COL6A1P12109 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
COL6A1P12109 API5P2-201ENST00000397055 1498 ntBASIC4.4□□□□□ -1.71
COL6A1P12109 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
COL6A1P12109 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
COL6A1P12109 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC4.4□□□□□ -1.71
COL6A1P12109 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.4□□□□□ -1.71
COL6A1P12109 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC4.4□□□□□ -1.71
COL6A1P12109 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.71
COL6A1P12109 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.4□□□□□ -1.71
COL6A1P12109 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
COL6A1P12109 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL6A1P12109 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC4.39□□□□□ -1.71
COL6A1P12109 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL6A1P12109 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL6A1P12109 RNU1-15P-201ENST00000353977 144 ntBASIC4.39□□□□□ -1.71
COL6A1P12109 Y_RNA.133-201ENST00000363428 110 ntBASIC4.39□□□□□ -1.71
COL6A1P12109 RNU6-1188P-201ENST00000363795 107 ntBASIC4.39□□□□□ -1.71
COL6A1P12109 Y_RNA.212-201ENST00000364177 102 ntBASIC4.39□□□□□ -1.71
COL6A1P12109 RNU6-188P-201ENST00000364207 107 ntBASIC4.39□□□□□ -1.71
COL6A1P12109 RNA5SP267-201ENST00000364893 126 ntBASIC4.39□□□□□ -1.71
COL6A1P12109 Y_RNA.482-201ENST00000384377 111 ntBASIC4.39□□□□□ -1.71
COL6A1P12109 Y_RNA.576-201ENST00000384781 102 ntBASIC4.39□□□□□ -1.71
COL6A1P12109 AL109755.1-201ENST00000401791 649 ntBASIC4.39□□□□□ -1.71
COL6A1P12109 AL356057.3-201ENST00000402607 340 ntBASIC4.39□□□□□ -1.71
COL6A1P12109 RNA5SP146-201ENST00000410743 123 ntBASIC4.39□□□□□ -1.71
COL6A1P12109 OFD1P1Y-201ENST00000411756 1225 ntBASIC4.39□□□□□ -1.71
COL6A1P12109 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL6A1P12109 AL139247.1-201ENST00000422768 325 ntBASIC4.39□□□□□ -1.71
COL6A1P12109 PMCHL1-202ENST00000423102 261 ntBASIC4.39□□□□□ -1.71
COL6A1P12109 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC4.39□□□□□ -1.71
COL6A1P12109 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC4.39□□□□□ -1.71
COL6A1P12109 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC4.39□□□□□ -1.71
COL6A1P12109 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL6A1P12109 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.39□□□□□ -1.71
COL6A1P12109 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.39□□□□□ -1.71
COL6A1P12109 RPL30P15-201ENST00000457129 321 ntBASIC4.39□□□□□ -1.71
COL6A1P12109 RPL21P8-201ENST00000465083 535 ntBASIC4.39□□□□□ -1.71
COL6A1P12109 HMGB1P25-201ENST00000468402 607 ntBASIC4.39□□□□□ -1.71
COL6A1P12109 AC135721.1-201ENST00000497954 479 ntBASIC4.39□□□□□ -1.71
COL6A1P12109 HMGN1P11-201ENST00000508668 303 ntBASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms