Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AC093151.1-201ENST00000427711 313 ntBASIC3.65□□□□□ -1.83
HOXA3O43365 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXA3O43365 AC006946.1-201ENST00000429106 328 ntBASIC3.65□□□□□ -1.83
HOXA3O43365 RPS29P17-201ENST00000430795 166 ntBASIC3.65□□□□□ -1.83
HOXA3O43365 MYL8P-204ENST00000431574 518 ntBASIC3.65□□□□□ -1.83
HOXA3O43365 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXA3O43365 HMGB1P12-201ENST00000438594 598 ntBASIC3.65□□□□□ -1.83
HOXA3O43365 DAP3P1-201ENST00000441522 278 ntBASIC3.65□□□□□ -1.83
HOXA3O43365 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HOXA3O43365 AL031274.1-201ENST00000450334 232 ntBASIC3.65□□□□□ -1.83
HOXA3O43365 RNU6-1037P-201ENST00000459571 107 ntBASIC3.65□□□□□ -1.83
HOXA3O43365 RPL9P32-201ENST00000464118 620 ntBASIC3.65□□□□□ -1.83
HOXA3O43365 RPL17P19-201ENST00000489069 552 ntBASIC3.65□□□□□ -1.83
HOXA3O43365 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXA3O43365 ACA59.1-201ENST00000515966 143 ntBASIC3.65□□□□□ -1.83
HOXA3O43365 SNORA70.16-201ENST00000516390 95 ntBASIC3.65□□□□□ -1.83
HOXA3O43365 SNORA31.9-201ENST00000516429 84 ntBASIC3.65□□□□□ -1.83
HOXA3O43365 RNU6-1073P-201ENST00000517182 106 ntBASIC3.65□□□□□ -1.83
HOXA3O43365 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
HOXA3O43365 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXA3O43365 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXA3O43365 CPDP1-201ENST00000579660 283 ntBASIC3.65□□□□□ -1.83
HOXA3O43365 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXA3O43365 IPO5P1-202ENST00000600039 287 ntBASIC3.65□□□□□ -1.83
HOXA3O43365 AC023043.4-201ENST00000612081 449 ntBASIC3.65□□□□□ -1.83
HOXA3O43365 AC114781.5-201ENST00000615297 108 ntBASIC3.65□□□□□ -1.83
HOXA3O43365 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC3.65□□□□□ -1.83
HOXA3O43365 U4.1-201ENST00000620349 87 ntBASIC3.65□□□□□ -1.83
HOXA3O43365 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
HOXA3O43365 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HOXA3O43365 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
HOXA3O43365 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.65□□□□□ -1.83
HOXA3O43365 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC3.65□□□□□ -1.83
HOXA3O43365 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HOXA3O43365 SALL4P2-201ENST00000423288 2910 ntBASIC3.64□□□□□ -1.83
HOXA3O43365 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXA3O43365 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HOXA3O43365 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HOXA3O43365 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
HOXA3O43365 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC3.64□□□□□ -1.83
HOXA3O43365 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
HOXA3O43365 Y_RNA.153-201ENST00000363615 91 ntBASIC3.64□□□□□ -1.83
HOXA3O43365 MIR1302-3-201ENST00000408128 138 ntBASIC3.64□□□□□ -1.83
HOXA3O43365 PGBD4P6-201ENST00000421501 610 ntBASIC3.64□□□□□ -1.83
HOXA3O43365 CEP57L1P1-201ENST00000430943 1201 ntBASIC3.64□□□□□ -1.83
HOXA3O43365 PHBP16-201ENST00000446318 950 ntBASIC3.64□□□□□ -1.83
HOXA3O43365 CECR9-201ENST00000453421 199 ntBASIC3.64□□□□□ -1.83
HOXA3O43365 RN7SL41P-201ENST00000476144 297 ntBASIC3.64□□□□□ -1.83
HOXA3O43365 RPL21P13-201ENST00000488305 481 ntBASIC3.64□□□□□ -1.83
HOXA3O43365 AC022447.4-201ENST00000504053 364 ntBASIC3.64□□□□□ -1.83
HOXA3O43365 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXA3O43365 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXA3O43365 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC3.64□□□□□ -1.83
HOXA3O43365 RN7SKP21-201ENST00000516503 220 ntBASIC3.64□□□□□ -1.83
HOXA3O43365 Y_RNA.721-201ENST00000517207 102 ntBASIC3.64□□□□□ -1.83
HOXA3O43365 AF186190.1-201ENST00000517470 480 ntBASIC3.64□□□□□ -1.83
HOXA3O43365 AC025755.1-201ENST00000521306 278 ntBASIC3.64□□□□□ -1.83
HOXA3O43365 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXA3O43365 AP002404.1-201ENST00000532005 451 ntBASIC3.64□□□□□ -1.83
HOXA3O43365 MIR3138-201ENST00000585238 82 ntBASIC3.64□□□□□ -1.83
HOXA3O43365 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXA3O43365 AL121917.1-203ENST00000605534 577 ntBASIC3.64□□□□□ -1.83
HOXA3O43365 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXA3O43365 MIR3976-201ENST00000606807 139 ntBASIC3.64□□□□□ -1.83
HOXA3O43365 SNORD58B-201ENST00000607313 66 ntBASIC3.64□□□□□ -1.83
HOXA3O43365 AL606534.2-204ENST00000635008 178 ntBASIC3.64□□□□□ -1.83
HOXA3O43365 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
HOXA3O43365 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
HOXA3O43365 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
HOXA3O43365 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXA3O43365 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HOXA3O43365 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
HOXA3O43365 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC3.64□□□□□ -1.83
HOXA3O43365 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HOXA3O43365 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HOXA3O43365 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC3.64□□□□□ -1.83
HOXA3O43365 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HOXA3O43365 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HOXA3O43365 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.63□□□□□ -1.83
HOXA3O43365 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
HOXA3O43365 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXA3O43365 RPL9P7-201ENST00000330965 580 ntBASIC3.63□□□□□ -1.83
HOXA3O43365 Y_RNA.39-201ENST00000362620 98 ntBASIC3.63□□□□□ -1.83
HOXA3O43365 RNU6-99P-201ENST00000364721 107 ntBASIC3.63□□□□□ -1.83
HOXA3O43365 Y_RNA.314-201ENST00000365114 102 ntBASIC3.63□□□□□ -1.83
HOXA3O43365 RNU6-26P-201ENST00000383985 107 ntBASIC3.63□□□□□ -1.83
HOXA3O43365 RNU6-933P-201ENST00000384424 107 ntBASIC3.63□□□□□ -1.83
HOXA3O43365 RNU6-505P-201ENST00000384427 107 ntBASIC3.63□□□□□ -1.83
HOXA3O43365 AL022722.2-201ENST00000402519 180 ntBASIC3.63□□□□□ -1.83
HOXA3O43365 RNU2-33P-201ENST00000410344 192 ntBASIC3.63□□□□□ -1.83
HOXA3O43365 RNA5SP146-201ENST00000410743 123 ntBASIC3.63□□□□□ -1.83
HOXA3O43365 AC114482.1-201ENST00000418010 247 ntBASIC3.63□□□□□ -1.83
HOXA3O43365 DPH3P2-201ENST00000422618 250 ntBASIC3.63□□□□□ -1.83
HOXA3O43365 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXA3O43365 EIF4HP2-201ENST00000424380 563 ntBASIC3.63□□□□□ -1.83
HOXA3O43365 AL513043.1-201ENST00000439124 535 ntBASIC3.63□□□□□ -1.83
HOXA3O43365 NUTF2P3-201ENST00000448540 384 ntBASIC3.63□□□□□ -1.83
HOXA3O43365 NDUFB1P2-201ENST00000449477 176 ntBASIC3.63□□□□□ -1.83
HOXA3O43365 ISCUP1-201ENST00000454451 448 ntBASIC3.63□□□□□ -1.83
HOXA3O43365 AL353752.1-201ENST00000454946 260 ntBASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 122.5 ms