Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 U8.3-201ENST00000363321 132 ntBASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 SNORD116-9-201ENST00000384000 95 ntBASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 SNORD116-3-201ENST00000384287 95 ntBASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 SNORD116-7-201ENST00000384404 95 ntBASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 SNORD116-5-201ENST00000384462 95 ntBASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 RPL17P50-201ENST00000396131 546 ntBASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 NDUFS5P1-201ENST00000405668 289 ntBASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 RNU2-33P-201ENST00000410344 192 ntBASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 RNA5SP344-201ENST00000411081 104 ntBASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 AC244505.4-201ENST00000434905 287 ntBASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 SETP8-201ENST00000435341 628 ntBASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 RPS29P6-201ENST00000438196 145 ntBASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 AL714022.1-201ENST00000439897 151 ntBASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 Z82210.1-201ENST00000440037 231 ntBASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 PIGFP3-201ENST00000441918 722 ntBASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 AC025750.2-201ENST00000442609 450 ntBASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 SSXP5-201ENST00000443473 287 ntBASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 RNU7-23P-201ENST00000459465 62 ntBASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 SNORD42A-201ENST00000459584 64 ntBASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 AC091826.1-201ENST00000514065 313 ntBASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 RNU6-928P-201ENST00000516876 104 ntBASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 SNORA31.26-201ENST00000517250 137 ntBASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 AC079600.2-201ENST00000550076 130 ntBASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 PIGPP4-201ENST00000584447 307 ntBASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 AC005771.1-201ENST00000585581 349 ntBASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 AC073544.2-201ENST00000601155 540 ntBASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 AC010338.1-201ENST00000621823 717 ntBASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 MAPK10-266ENST00000641066 6555 ntBASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
CPSF3Q9UKF6 AC092593.1-201ENST00000515413 1815 ntBASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 OR5J1P-201ENST00000313544 939 ntBASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 RNU1-105P-201ENST00000363470 161 ntBASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 RPA3-203ENST00000401447 414 ntTSL 3 BASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 AL122016.1-201ENST00000403365 367 ntBASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 RNU6-248P-201ENST00000410720 107 ntBASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 AL451074.5-201ENST00000415894 435 ntBASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 AC092047.1-201ENST00000424997 240 ntBASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 AC010153.1-201ENST00000432862 727 ntBASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 MTCO2P16-201ENST00000436962 677 ntBASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 ARPC3P1-201ENST00000437218 533 ntBASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 AL031667.1-201ENST00000440222 725 ntBASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 RPS24P13-201ENST00000442520 397 ntBASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 USP9YP29-201ENST00000445112 563 ntBASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 RGS5-217ENST00000451759 835 ntTSL 3 BASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 RPL31P3-201ENST00000458430 332 ntBASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 AP001486.1-201ENST00000463339 476 ntBASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 AL049873.1-201ENST00000480540 376 ntBASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 AC117522.3-201ENST00000507974 584 ntBASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 RN7SKP132-201ENST00000516001 208 ntBASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 SNORA31.3-201ENST00000516029 96 ntBASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 RNU6-927P-201ENST00000516199 100 ntBASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 AP006587.4-201ENST00000526053 529 ntBASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 AC128657.1-201ENST00000549459 145 ntBASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 AL161729.4-201ENST00000604650 476 ntBASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 AC019159.1-201ENST00000605094 187 ntBASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 AL020991.1-201ENST00000612314 373 ntBASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 UBE2Q2P2-203ENST00000613592 761 ntBASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 AC108479.2-201ENST00000617314 601 ntBASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 AC073308.1-201ENST00000623696 305 ntBASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 PSMD5-AS1-215ENST00000640622 205 ntBASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 265.6 ms