Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 COX7A2P2-201ENST00000505291 250 ntBASIC3.59□□□□□ -1.83
EBF3Q9H4W6 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC3.59□□□□□ -1.83
EBF3Q9H4W6 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC3.59□□□□□ -1.83
EBF3Q9H4W6 MTCO3P44-201ENST00000510977 541 ntBASIC3.59□□□□□ -1.83
EBF3Q9H4W6 SNORA70.14-201ENST00000516205 110 ntBASIC3.59□□□□□ -1.83
EBF3Q9H4W6 SNORD60.2-201ENST00000516883 86 ntBASIC3.59□□□□□ -1.83
EBF3Q9H4W6 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.59□□□□□ -1.83
EBF3Q9H4W6 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.59□□□□□ -1.83
EBF3Q9H4W6 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.59□□□□□ -1.83
EBF3Q9H4W6 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC3.59□□□□□ -1.83
EBF3Q9H4W6 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.59□□□□□ -1.83
EBF3Q9H4W6 KLKP1-201ENST00000595979 403 ntBASIC3.59□□□□□ -1.83
EBF3Q9H4W6 KC877982.1-201ENST00000602313 470 ntBASIC3.59□□□□□ -1.83
EBF3Q9H4W6 AL355812.1-201ENST00000603215 216 ntBASIC3.59□□□□□ -1.83
EBF3Q9H4W6 AC004853.1-201ENST00000604902 698 ntBASIC3.59□□□□□ -1.83
EBF3Q9H4W6 MIR7112-201ENST00000616126 65 ntBASIC3.59□□□□□ -1.83
EBF3Q9H4W6 AC010205.1-201ENST00000616668 449 ntBASIC3.59□□□□□ -1.83
EBF3Q9H4W6 AC008121.3-201ENST00000618726 433 ntBASIC3.59□□□□□ -1.83
EBF3Q9H4W6 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC3.59□□□□□ -1.83
EBF3Q9H4W6 AC134503.1-201ENST00000633048 54 ntBASIC3.59□□□□□ -1.83
EBF3Q9H4W6 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
EBF3Q9H4W6 AL732372.2-225ENST00000642124 456 ntBASIC3.59□□□□□ -1.83
EBF3Q9H4W6 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.84
EBF3Q9H4W6 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC3.59□□□□□ -1.84
EBF3Q9H4W6 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.59□□□□□ -1.84
EBF3Q9H4W6 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
EBF3Q9H4W6 PABPC1P7-201ENST00000413177 1513 ntBASIC3.59□□□□□ -1.84
EBF3Q9H4W6 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
EBF3Q9H4W6 OR4G1P-203ENST00000641984 1631 ntBASIC3.59□□□□□ -1.84
EBF3Q9H4W6 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
EBF3Q9H4W6 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.58□□□□□ -1.84
EBF3Q9H4W6 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.58□□□□□ -1.84
EBF3Q9H4W6 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
EBF3Q9H4W6 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.58□□□□□ -1.84
EBF3Q9H4W6 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
EBF3Q9H4W6 SNORD42.2-201ENST00000365570 69 ntBASIC3.58□□□□□ -1.84
EBF3Q9H4W6 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
EBF3Q9H4W6 RNU6-339P-201ENST00000384310 107 ntBASIC3.58□□□□□ -1.84
EBF3Q9H4W6 RNU6-606P-201ENST00000384721 111 ntBASIC3.58□□□□□ -1.84
EBF3Q9H4W6 MIR153-1-201ENST00000384914 90 ntBASIC3.58□□□□□ -1.84
EBF3Q9H4W6 MIR128-1-201ENST00000384921 82 ntBASIC3.58□□□□□ -1.84
EBF3Q9H4W6 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
EBF3Q9H4W6 Y_RNA.579-201ENST00000390939 94 ntBASIC3.58□□□□□ -1.84
EBF3Q9H4W6 Y_RNA.615-201ENST00000410769 117 ntBASIC3.58□□□□□ -1.84
EBF3Q9H4W6 AC017079.2-201ENST00000416102 485 ntBASIC3.58□□□□□ -1.84
EBF3Q9H4W6 MTCYBP8-201ENST00000422855 651 ntBASIC3.58□□□□□ -1.84
EBF3Q9H4W6 AC006548.1-201ENST00000427470 102 ntBASIC3.58□□□□□ -1.84
EBF3Q9H4W6 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.58□□□□□ -1.84
EBF3Q9H4W6 AL158071.1-201ENST00000430315 461 ntBASIC3.58□□□□□ -1.84
EBF3Q9H4W6 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC3.58□□□□□ -1.84
EBF3Q9H4W6 GPR143P-201ENST00000434155 205 ntBASIC3.58□□□□□ -1.84
EBF3Q9H4W6 UBE2V1P13-201ENST00000436983 439 ntBASIC3.58□□□□□ -1.84
EBF3Q9H4W6 AC006539.3-201ENST00000454258 129 ntBASIC3.58□□□□□ -1.84
EBF3Q9H4W6 SNORD121B-201ENST00000458838 81 ntBASIC3.58□□□□□ -1.84
EBF3Q9H4W6 RNU6-329P-201ENST00000459618 107 ntBASIC3.58□□□□□ -1.84
EBF3Q9H4W6 AC010401.1-201ENST00000463867 348 ntBASIC3.58□□□□□ -1.84
EBF3Q9H4W6 AP000873.1-201ENST00000463987 400 ntBASIC3.58□□□□□ -1.84
EBF3Q9H4W6 MTCO2P29-201ENST00000465212 189 ntBASIC3.58□□□□□ -1.84
EBF3Q9H4W6 AC055855.1-201ENST00000489563 579 ntBASIC3.58□□□□□ -1.84
EBF3Q9H4W6 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
EBF3Q9H4W6 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC3.58□□□□□ -1.84
EBF3Q9H4W6 TTC39CP1-201ENST00000512513 755 ntBASIC3.58□□□□□ -1.84
EBF3Q9H4W6 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC3.58□□□□□ -1.84
EBF3Q9H4W6 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.58□□□□□ -1.84
EBF3Q9H4W6 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.58□□□□□ -1.84
EBF3Q9H4W6 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC3.58□□□□□ -1.84
EBF3Q9H4W6 TGIF1P1-201ENST00000558095 802 ntBASIC3.58□□□□□ -1.84
EBF3Q9H4W6 HMGB1P6-201ENST00000569046 646 ntBASIC3.58□□□□□ -1.84
EBF3Q9H4W6 AC103710.3-201ENST00000608157 948 ntBASIC3.58□□□□□ -1.84
EBF3Q9H4W6 AC079597.1-201ENST00000624306 508 ntBASIC3.58□□□□□ -1.84
EBF3Q9H4W6 CR381572.1-201ENST00000625098 102 ntBASIC3.58□□□□□ -1.84
EBF3Q9H4W6 ZNF736P3Y-201ENST00000428264 1465 ntBASIC3.58□□□□□ -1.84
EBF3Q9H4W6 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
EBF3Q9H4W6 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.58□□□□□ -1.84
EBF3Q9H4W6 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
EBF3Q9H4W6 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
EBF3Q9H4W6 SNORD6-201ENST00000365444 73 ntBASIC3.57□□□□□ -1.84
EBF3Q9H4W6 RNU4-20P-201ENST00000365601 151 ntBASIC3.57□□□□□ -1.84
EBF3Q9H4W6 RNU6-43P-201ENST00000384302 107 ntBASIC3.57□□□□□ -1.84
EBF3Q9H4W6 SNORD51-201ENST00000384320 80 ntBASIC3.57□□□□□ -1.84
EBF3Q9H4W6 RNU6-831P-201ENST00000384548 107 ntBASIC3.57□□□□□ -1.84
EBF3Q9H4W6 U3.19-201ENST00000390893 196 ntBASIC3.57□□□□□ -1.84
EBF3Q9H4W6 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
EBF3Q9H4W6 MIR548P-201ENST00000408336 84 ntBASIC3.57□□□□□ -1.84
EBF3Q9H4W6 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC3.57□□□□□ -1.84
EBF3Q9H4W6 VN1R36P-201ENST00000414936 291 ntBASIC3.57□□□□□ -1.84
EBF3Q9H4W6 DUTP6-201ENST00000425573 462 ntBASIC3.57□□□□□ -1.84
EBF3Q9H4W6 BX679664.1-201ENST00000434429 253 ntBASIC3.57□□□□□ -1.84
EBF3Q9H4W6 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.57□□□□□ -1.84
EBF3Q9H4W6 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.57□□□□□ -1.84
EBF3Q9H4W6 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
EBF3Q9H4W6 MTND4P27-201ENST00000450813 1354 ntBASIC3.57□□□□□ -1.84
EBF3Q9H4W6 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC3.57□□□□□ -1.84
EBF3Q9H4W6 SNORD108-201ENST00000459332 71 ntBASIC3.57□□□□□ -1.84
EBF3Q9H4W6 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.57□□□□□ -1.84
EBF3Q9H4W6 MRPS17P3-201ENST00000465453 385 ntBASIC3.57□□□□□ -1.84
EBF3Q9H4W6 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC3.57□□□□□ -1.84
EBF3Q9H4W6 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
EBF3Q9H4W6 AP001086.1-201ENST00000494882 321 ntBASIC3.57□□□□□ -1.84
EBF3Q9H4W6 RPL38P4-201ENST00000502376 214 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms