Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 Y_RNA.668-201ENST00000516233 93 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 MIR892C-201ENST00000516410 77 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 RAB9BP1-201ENST00000519581 626 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 AC131281.1-201ENST00000522984 164 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 AP004371.1-201ENST00000525240 214 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 TRAV37-201ENST00000553906 342 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 MIR4273-201ENST00000582824 84 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 AC091178.1-203ENST00000584586 279 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 Z98751.3-201ENST00000604447 521 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 AL161798.1-201ENST00000604630 131 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 AC123912.5-201ENST00000605470 343 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 AC107871.2-201ENST00000612894 502 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 AL138825.1-201ENST00000618587 192 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 U2.1-201ENST00000618978 145 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 MIR7641-1-201ENST00000627518 61 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 AC004925.1-201ENST00000624256 2706 ntBASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 Y_RNA.33-201ENST00000362591 102 ntBASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 RNU1-32P-201ENST00000363937 159 ntBASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 SNORD14.1-201ENST00000365609 90 ntBASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 RNU6-1156P-201ENST00000410365 100 ntBASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 Y_RNA.625-201ENST00000411256 107 ntBASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 AC108032.1-201ENST00000416706 207 ntBASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 RPL7P2-201ENST00000427639 268 ntBASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 USP9YP16-201ENST00000430287 407 ntBASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 RPS24P13-201ENST00000442520 397 ntBASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 AC012671.1-201ENST00000451912 203 ntBASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 USP9YP23-201ENST00000455085 407 ntBASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 RPL7P5-201ENST00000471472 736 ntBASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 RPL22P13-201ENST00000493291 347 ntBASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 SNORA31.20-201ENST00000517111 133 ntBASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 CBX3P8-201ENST00000532412 525 ntBASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 TRAV32-201ENST00000553993 340 ntBASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 AC016727.2-201ENST00000603988 621 ntBASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 AC020634.1-201ENST00000608701 549 ntBASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 MIR4272-201ENST00000635924 64 ntBASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 AC008669.1-201ENST00000565823 2178 ntBASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 AC125257.1-201ENST00000560400 2930 ntBASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
PTCHD1Q96NR3 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 AC139713.2-214ENST00000642059 1811 ntBASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 DEFB108F-201ENST00000344638 222 ntBASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 RNA5SP447-201ENST00000363749 119 ntBASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 RNU6-933P-201ENST00000384424 107 ntBASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 AL138885.1-201ENST00000405921 675 ntBASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 MIR1252-201ENST00000408861 65 ntBASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 FAR2P2-201ENST00000413041 594 ntBASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 AC009310.1-201ENST00000414414 451 ntBASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 AL158156.1-201ENST00000422509 473 ntBASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 AC091390.3-201ENST00000426478 338 ntBASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 CHEK2P4-201ENST00000450340 246 ntBASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 RN7SL481P-201ENST00000477764 299 ntBASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 AC069499.1-201ENST00000489433 509 ntBASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 AP000827.1-201ENST00000527814 258 ntBASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 MIR3976-201ENST00000606807 139 ntBASIC4.23□□□□□ -1.73
PTCHD1Q96NR3 AC062037.2-201ENST00000610137 73 ntBASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 133.1 ms