Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CHFRQ96EP1 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CHFRQ96EP1 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
CHFRQ96EP1 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.07□□□□□ -1.76
CHFRQ96EP1 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CHFRQ96EP1 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.06□□□□□ -1.76
CHFRQ96EP1 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
CHFRQ96EP1 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.06□□□□□ -1.76
CHFRQ96EP1 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.06□□□□□ -1.76
CHFRQ96EP1 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CHFRQ96EP1 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
CHFRQ96EP1 AL139276.1-201ENST00000311910 1001 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CHFRQ96EP1 U1.1-201ENST00000384101 164 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 RNU6-39P-201ENST00000384344 107 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC4.06□□□□□ -1.76
CHFRQ96EP1 RPS23P10-201ENST00000416185 486 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 AC005019.1-201ENST00000436455 431 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 AF228730.2-201ENST00000438784 848 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 RPL7P52-201ENST00000449200 742 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 GSTA11P-201ENST00000452866 669 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 RPS15AP1-201ENST00000457423 391 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC4.06□□□□□ -1.76
CHFRQ96EP1 RNU7-180P-201ENST00000459240 63 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 AC026410.2-201ENST00000460281 156 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 AL049714.1-201ENST00000466686 347 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 AP001025.2-201ENST00000490908 477 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 AC034222.1-201ENST00000494052 532 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 RPS27P27-201ENST00000498779 255 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 AC097473.1-201ENST00000508142 408 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 RPL39P5-202ENST00000512505 151 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 RNU6-408P-201ENST00000515910 100 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 RNU6-488P-201ENST00000515918 99 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 AC087369.1-201ENST00000520775 996 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC4.06□□□□□ -1.76
CHFRQ96EP1 AC109635.4-202ENST00000531666 412 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC4.06□□□□□ -1.76
CHFRQ96EP1 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC4.06□□□□□ -1.76
CHFRQ96EP1 SULT1C2P1-202ENST00000562418 459 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.06□□□□□ -1.76
CHFRQ96EP1 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC4.06□□□□□ -1.76
CHFRQ96EP1 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC4.06□□□□□ -1.76
CHFRQ96EP1 MIR3672-201ENST00000584290 82 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 SNORD39.3-201ENST00000584451 71 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 BNIP3P16-201ENST00000589779 534 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 GLUD1P4-201ENST00000590914 418 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC4.06□□□□□ -1.76
CHFRQ96EP1 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC4.06□□□□□ -1.76
CHFRQ96EP1 BBIP1P1-201ENST00000602999 279 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 AL139395.1-201ENST00000603662 160 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 MIR4727-201ENST00000622232 55 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 AL669831.3-213ENST00000636676 183 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 U6.101-201ENST00000637707 76 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 AC009093.8-201ENST00000641769 292 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 AL732372.2-225ENST00000642124 456 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 OTUD4P1-201ENST00000237841 3067 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CHFRQ96EP1 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
CHFRQ96EP1 AL133383.2-201ENST00000622958 2336 ntBASIC4.06□□□□□ -1.76
CHFRQ96EP1 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
CHFRQ96EP1 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CHFRQ96EP1 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
CHFRQ96EP1 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.05□□□□□ -1.76
CHFRQ96EP1 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CHFRQ96EP1 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
CHFRQ96EP1 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CHFRQ96EP1 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CHFRQ96EP1 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CHFRQ96EP1 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CHFRQ96EP1 Y_RNA.80-201ENST00000362996 102 ntBASIC4.05□□□□□ -1.76
CHFRQ96EP1 SNORA5A-201ENST00000384111 134 ntBASIC4.05□□□□□ -1.76
CHFRQ96EP1 RNU6-890P-201ENST00000384121 107 ntBASIC4.05□□□□□ -1.76
CHFRQ96EP1 MIR607-201ENST00000385241 96 ntBASIC4.05□□□□□ -1.76
CHFRQ96EP1 RNU6-328P-201ENST00000390887 106 ntBASIC4.05□□□□□ -1.76
CHFRQ96EP1 AL606923.1-201ENST00000406616 190 ntBASIC4.05□□□□□ -1.76
CHFRQ96EP1 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC4.05□□□□□ -1.76
CHFRQ96EP1 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC4.05□□□□□ -1.76
CHFRQ96EP1 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC4.05□□□□□ -1.76
CHFRQ96EP1 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC4.05□□□□□ -1.76
CHFRQ96EP1 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC4.05□□□□□ -1.76
CHFRQ96EP1 CYCSP43-201ENST00000438233 310 ntBASIC4.05□□□□□ -1.76
CHFRQ96EP1 MTND1P17-201ENST00000448961 204 ntBASIC4.05□□□□□ -1.76
CHFRQ96EP1 RPL23AP15-201ENST00000450202 459 ntBASIC4.05□□□□□ -1.76
CHFRQ96EP1 AL118520.1-201ENST00000450770 291 ntBASIC4.05□□□□□ -1.76
CHFRQ96EP1 HMGN3P1-201ENST00000453847 193 ntBASIC4.05□□□□□ -1.76
CHFRQ96EP1 RPS29P15-201ENST00000458329 171 ntBASIC4.05□□□□□ -1.76
CHFRQ96EP1 RPL21P104-201ENST00000464143 478 ntBASIC4.05□□□□□ -1.76
CHFRQ96EP1 RPL23AP11-201ENST00000475260 469 ntBASIC4.05□□□□□ -1.76
CHFRQ96EP1 AC126389.1-201ENST00000477436 290 ntBASIC4.05□□□□□ -1.76
CHFRQ96EP1 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC4.05□□□□□ -1.76
CHFRQ96EP1 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC4.05□□□□□ -1.76
CHFRQ96EP1 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC4.05□□□□□ -1.76
CHFRQ96EP1 IGKV2D-23-201ENST00000518179 286 ntBASIC4.05□□□□□ -1.76
CHFRQ96EP1 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC4.05□□□□□ -1.76
CHFRQ96EP1 AC017100.2-201ENST00000584628 355 ntBASIC4.05□□□□□ -1.76
CHFRQ96EP1 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC4.05□□□□□ -1.76
CHFRQ96EP1 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC4.05□□□□□ -1.76
CHFRQ96EP1 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC4.05□□□□□ -1.76
CHFRQ96EP1 AC007566.2-201ENST00000603642 413 ntBASIC4.05□□□□□ -1.76
CHFRQ96EP1 ATP1B3P1-201ENST00000605365 821 ntBASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 130.6 ms