Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC1.79□□□□□ -2.12
LMX1AQ8TE12 AC103710.4-201ENST00000609301 899 ntBASIC1.79□□□□□ -2.12
LMX1AQ8TE12 MIR6840-201ENST00000611937 71 ntBASIC1.79□□□□□ -2.12
LMX1AQ8TE12 AL138478.1-201ENST00000612252 832 ntBASIC1.79□□□□□ -2.12
LMX1AQ8TE12 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
LMX1AQ8TE12 AC123767.1-202ENST00000620407 817 ntBASIC1.79□□□□□ -2.12
LMX1AQ8TE12 OR1S1-201ENST00000624470 978 ntBASIC1.79□□□□□ -2.12
LMX1AQ8TE12 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC1.79□□□□□ -2.12
LMX1AQ8TE12 PSMD5-AS1-215ENST00000640622 205 ntBASIC1.79□□□□□ -2.12
LMX1AQ8TE12 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.79□□□□□ -2.12
LMX1AQ8TE12 CCT4P2-201ENST00000233836 1548 ntBASIC1.79□□□□□ -2.12
LMX1AQ8TE12 AC080128.1-201ENST00000474389 1917 ntBASIC1.79□□□□□ -2.12
LMX1AQ8TE12 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.78□□□□□ -2.12
LMX1AQ8TE12 AC010329.5-201ENST00000623497 2174 ntBASIC1.78□□□□□ -2.12
LMX1AQ8TE12 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
LMX1AQ8TE12 RNU6-28P-201ENST00000362378 107 ntBASIC1.78□□□□□ -2.12
LMX1AQ8TE12 RNU6-952P-201ENST00000391164 108 ntBASIC1.78□□□□□ -2.12
LMX1AQ8TE12 AL627390.1-201ENST00000396055 340 ntBASIC1.78□□□□□ -2.12
LMX1AQ8TE12 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC1.78□□□□□ -2.12
LMX1AQ8TE12 GTF2IP3-201ENST00000433887 494 ntBASIC1.78□□□□□ -2.12
LMX1AQ8TE12 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC1.78□□□□□ -2.12
LMX1AQ8TE12 BNIP3P2-201ENST00000441221 577 ntBASIC1.78□□□□□ -2.12
LMX1AQ8TE12 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC1.78□□□□□ -2.12
LMX1AQ8TE12 RNU7-136P-201ENST00000458819 69 ntBASIC1.78□□□□□ -2.12
LMX1AQ8TE12 AC108734.3-201ENST00000481241 1165 ntBASIC1.78□□□□□ -2.12
LMX1AQ8TE12 AC104629.1-201ENST00000494226 508 ntBASIC1.78□□□□□ -2.12
LMX1AQ8TE12 RPS29P11-201ENST00000496507 171 ntBASIC1.78□□□□□ -2.12
LMX1AQ8TE12 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
LMX1AQ8TE12 SUMO2P5-201ENST00000506790 245 ntBASIC1.78□□□□□ -2.12
LMX1AQ8TE12 AC108729.3-201ENST00000513484 108 ntBASIC1.78□□□□□ -2.12
LMX1AQ8TE12 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC1.78□□□□□ -2.12
LMX1AQ8TE12 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC1.78□□□□□ -2.12
LMX1AQ8TE12 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC1.78□□□□□ -2.12
LMX1AQ8TE12 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
LMX1AQ8TE12 AL353997.4-201ENST00000586196 166 ntBASIC1.78□□□□□ -2.12
LMX1AQ8TE12 AL606834.3-201ENST00000602615 496 ntBASIC1.78□□□□□ -2.12
LMX1AQ8TE12 AC025594.3-201ENST00000613068 790 ntBASIC1.78□□□□□ -2.12
LMX1AQ8TE12 AL590099.1-201ENST00000615276 138 ntBASIC1.78□□□□□ -2.12
LMX1AQ8TE12 AL158163.2-201ENST00000619110 700 ntBASIC1.78□□□□□ -2.12
LMX1AQ8TE12 AP000553.5-201ENST00000641933 54 ntBASIC1.78□□□□□ -2.12
LMX1AQ8TE12 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
LMX1AQ8TE12 HSPA8P4-201ENST00000511877 1920 ntBASIC1.78□□□□□ -2.13
LMX1AQ8TE12 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC1.77□□□□□ -2.13
LMX1AQ8TE12 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
LMX1AQ8TE12 AC005832.2-201ENST00000538921 1430 ntBASIC1.77□□□□□ -2.13
LMX1AQ8TE12 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
LMX1AQ8TE12 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
LMX1AQ8TE12 AL596028.1-201ENST00000326971 197 ntBASIC1.77□□□□□ -2.13
LMX1AQ8TE12 RNU5E-8P-201ENST00000363502 116 ntBASIC1.77□□□□□ -2.13
LMX1AQ8TE12 Y_RNA.234-201ENST00000364409 97 ntBASIC1.77□□□□□ -2.13
LMX1AQ8TE12 RNU6-224P-201ENST00000384055 107 ntBASIC1.77□□□□□ -2.13
LMX1AQ8TE12 RNU6-217P-201ENST00000384164 104 ntBASIC1.77□□□□□ -2.13
LMX1AQ8TE12 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC1.77□□□□□ -2.13
LMX1AQ8TE12 RNA5SP338-201ENST00000410495 85 ntBASIC1.77□□□□□ -2.13
LMX1AQ8TE12 RPL23AP36-201ENST00000413895 458 ntBASIC1.77□□□□□ -2.13
LMX1AQ8TE12 MTND1P23-201ENST00000416931 372 ntBASIC1.77□□□□□ -2.13
LMX1AQ8TE12 AL139421.1-201ENST00000423010 169 ntBASIC1.77□□□□□ -2.13
LMX1AQ8TE12 AC007560.1-201ENST00000426912 237 ntBASIC1.77□□□□□ -2.13
LMX1AQ8TE12 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC1.77□□□□□ -2.13
LMX1AQ8TE12 PGBD4P3-201ENST00000440731 581 ntBASIC1.77□□□□□ -2.13
LMX1AQ8TE12 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.77□□□□□ -2.13
LMX1AQ8TE12 RN7SKP210-201ENST00000459176 261 ntBASIC1.77□□□□□ -2.13
LMX1AQ8TE12 SNORD13-201ENST00000459299 104 ntBASIC1.77□□□□□ -2.13
LMX1AQ8TE12 AC090515.1-201ENST00000465295 476 ntBASIC1.77□□□□□ -2.13
LMX1AQ8TE12 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC1.77□□□□□ -2.13
LMX1AQ8TE12 AC079804.2-201ENST00000490376 200 ntBASIC1.77□□□□□ -2.13
LMX1AQ8TE12 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC1.77□□□□□ -2.13
LMX1AQ8TE12 AC114786.4-201ENST00000508771 728 ntBASIC1.77□□□□□ -2.13
LMX1AQ8TE12 AC107393.1-201ENST00000512403 346 ntBASIC1.77□□□□□ -2.13
LMX1AQ8TE12 AC114797.1-201ENST00000514003 728 ntBASIC1.77□□□□□ -2.13
LMX1AQ8TE12 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC1.77□□□□□ -2.13
LMX1AQ8TE12 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC1.77□□□□□ -2.13
LMX1AQ8TE12 AL391261.3-201ENST00000557194 520 ntBASIC1.77□□□□□ -2.13
LMX1AQ8TE12 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.77□□□□□ -2.13
LMX1AQ8TE12 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC1.77□□□□□ -2.13
LMX1AQ8TE12 AL161729.4-201ENST00000604650 476 ntBASIC1.77□□□□□ -2.13
LMX1AQ8TE12 AC112220.2-201ENST00000605513 533 ntBASIC1.77□□□□□ -2.13
LMX1AQ8TE12 AC004067.1-201ENST00000608733 700 ntBASIC1.77□□□□□ -2.13
LMX1AQ8TE12 AC005332.10-201ENST00000612725 619 ntBASIC1.77□□□□□ -2.13
LMX1AQ8TE12 AC108479.2-201ENST00000617314 601 ntBASIC1.77□□□□□ -2.13
LMX1AQ8TE12 MIR4275-201ENST00000636486 87 ntBASIC1.77□□□□□ -2.13
LMX1AQ8TE12 MIR7515-201ENST00000637837 67 ntBASIC1.77□□□□□ -2.13
LMX1AQ8TE12 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.77□□□□□ -2.13
LMX1AQ8TE12 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.77□□□□□ -2.13
LMX1AQ8TE12 AL079343.1-201ENST00000572358 1771 ntBASIC1.77□□□□□ -2.13
LMX1AQ8TE12 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
LMX1AQ8TE12 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC1.76□□□□□ -2.13
LMX1AQ8TE12 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
LMX1AQ8TE12 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.76□□□□□ -2.13
LMX1AQ8TE12 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
LMX1AQ8TE12 MIR325-201ENST00000385260 98 ntBASIC1.76□□□□□ -2.13
LMX1AQ8TE12 Y_RNA.578-201ENST00000390903 88 ntBASIC1.76□□□□□ -2.13
LMX1AQ8TE12 MIR1294-201ENST00000408503 142 ntBASIC1.76□□□□□ -2.13
LMX1AQ8TE12 AC069282.1-201ENST00000411911 526 ntBASIC1.76□□□□□ -2.13
LMX1AQ8TE12 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC1.76□□□□□ -2.13
LMX1AQ8TE12 HMGB1P49-201ENST00000418882 569 ntBASIC1.76□□□□□ -2.13
LMX1AQ8TE12 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC1.76□□□□□ -2.13
LMX1AQ8TE12 AC108667.1-201ENST00000428618 249 ntBASIC1.76□□□□□ -2.13
LMX1AQ8TE12 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
LMX1AQ8TE12 Z82210.1-201ENST00000440037 231 ntBASIC1.76□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms