Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC2.57□□□□□ -2
ZNF540Q8NDQ6 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC2.57□□□□□ -2
ZNF540Q8NDQ6 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.57□□□□□ -2
ZNF540Q8NDQ6 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC2.57□□□□□ -2
ZNF540Q8NDQ6 AC003982.1-202ENST00000469928 248 ntBASIC2.57□□□□□ -2
ZNF540Q8NDQ6 AC004263.1-201ENST00000479327 332 ntBASIC2.57□□□□□ -2
ZNF540Q8NDQ6 AC096576.1-201ENST00000489014 359 ntBASIC2.57□□□□□ -2
ZNF540Q8NDQ6 AC104090.1-201ENST00000506341 1171 ntBASIC2.57□□□□□ -2
ZNF540Q8NDQ6 HMGB3P3-201ENST00000510526 400 ntBASIC2.57□□□□□ -2
ZNF540Q8NDQ6 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC2.57□□□□□ -2
ZNF540Q8NDQ6 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.57□□□□□ -2
ZNF540Q8NDQ6 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC2.57□□□□□ -2
ZNF540Q8NDQ6 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC2.57□□□□□ -2
ZNF540Q8NDQ6 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC2.57□□□□□ -2
ZNF540Q8NDQ6 RPS15AP11-201ENST00000594193 385 ntBASIC2.57□□□□□ -2
ZNF540Q8NDQ6 AC080013.3-201ENST00000606839 578 ntBASIC2.57□□□□□ -2
ZNF540Q8NDQ6 CR381653.2-201ENST00000624041 768 ntBASIC2.57□□□□□ -2
ZNF540Q8NDQ6 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC2.57□□□□□ -2
ZNF540Q8NDQ6 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
ZNF540Q8NDQ6 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.57□□□□□ -2
ZNF540Q8NDQ6 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC2.56□□□□□ -2
ZNF540Q8NDQ6 EEF1A1P41-201ENST00000414667 207 ntBASIC2.56□□□□□ -2
ZNF540Q8NDQ6 BX276092.3-201ENST00000424182 230 ntBASIC2.56□□□□□ -2
ZNF540Q8NDQ6 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC2.56□□□□□ -2
ZNF540Q8NDQ6 MTND1P32-201ENST00000433043 938 ntBASIC2.56□□□□□ -2
ZNF540Q8NDQ6 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.56□□□□□ -2
ZNF540Q8NDQ6 HMGN2P10-201ENST00000448085 265 ntBASIC2.56□□□□□ -2
ZNF540Q8NDQ6 AL441985.1-201ENST00000457727 251 ntBASIC2.56□□□□□ -2
ZNF540Q8NDQ6 AC034244.1-201ENST00000507687 207 ntBASIC2.56□□□□□ -2
ZNF540Q8NDQ6 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.56□□□□□ -2
ZNF540Q8NDQ6 MIR892C-201ENST00000516410 77 ntBASIC2.56□□□□□ -2
ZNF540Q8NDQ6 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC2.56□□□□□ -2
ZNF540Q8NDQ6 MAL2-203ENST00000534619 578 ntTSL 4 BASIC2.56□□□□□ -2
ZNF540Q8NDQ6 ZNF321P-202ENST00000550843 495 ntBASIC2.56□□□□□ -2
ZNF540Q8NDQ6 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC2.56□□□□□ -2
ZNF540Q8NDQ6 AC021739.1-201ENST00000559631 174 ntBASIC2.56□□□□□ -2
ZNF540Q8NDQ6 AC022662.1-201ENST00000580252 331 ntBASIC2.56□□□□□ -2
ZNF540Q8NDQ6 MIR4765-201ENST00000585007 77 ntBASIC2.56□□□□□ -2
ZNF540Q8NDQ6 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC2.56□□□□□ -2
ZNF540Q8NDQ6 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC2.56□□□□□ -2
ZNF540Q8NDQ6 AL161798.1-201ENST00000604630 131 ntBASIC2.56□□□□□ -2
ZNF540Q8NDQ6 AC007038.2-201ENST00000608095 740 ntBASIC2.56□□□□□ -2
ZNF540Q8NDQ6 AC004908.3-201ENST00000610248 625 ntBASIC2.56□□□□□ -2
ZNF540Q8NDQ6 BX664608.1-201ENST00000610519 487 ntBASIC2.56□□□□□ -2
ZNF540Q8NDQ6 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC2.56□□□□□ -2
ZNF540Q8NDQ6 MIR6852-201ENST00000621699 66 ntBASIC2.56□□□□□ -2
ZNF540Q8NDQ6 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC2.56□□□□□ -2
ZNF540Q8NDQ6 MTND4P35-201ENST00000604257 1375 ntBASIC2.56□□□□□ -2
ZNF540Q8NDQ6 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC2.56□□□□□ -2
ZNF540Q8NDQ6 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.55□□□□□ -2
ZNF540Q8NDQ6 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
ZNF540Q8NDQ6 MIR26A1-201ENST00000362205 77 ntBASIC2.55□□□□□ -2
ZNF540Q8NDQ6 RNU6-486P-201ENST00000363116 107 ntBASIC2.55□□□□□ -2
ZNF540Q8NDQ6 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
ZNF540Q8NDQ6 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC2.55□□□□□ -2
ZNF540Q8NDQ6 U6atac.2-201ENST00000408644 118 ntBASIC2.55□□□□□ -2
ZNF540Q8NDQ6 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC2.55□□□□□ -2
ZNF540Q8NDQ6 AC010099.3-201ENST00000423896 409 ntBASIC2.55□□□□□ -2
ZNF540Q8NDQ6 AL353729.1-201ENST00000425044 720 ntBASIC2.55□□□□□ -2
ZNF540Q8NDQ6 AC010153.1-201ENST00000432862 727 ntBASIC2.55□□□□□ -2
ZNF540Q8NDQ6 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC2.55□□□□□ -2
ZNF540Q8NDQ6 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.55□□□□□ -2
ZNF540Q8NDQ6 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC2.55□□□□□ -2
ZNF540Q8NDQ6 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC2.55□□□□□ -2
ZNF540Q8NDQ6 AL121769.1-201ENST00000469473 401 ntBASIC2.55□□□□□ -2
ZNF540Q8NDQ6 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC2.55□□□□□ -2
ZNF540Q8NDQ6 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.55□□□□□ -2
ZNF540Q8NDQ6 HSPE1P23-201ENST00000509838 286 ntBASIC2.55□□□□□ -2
ZNF540Q8NDQ6 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.55□□□□□ -2
ZNF540Q8NDQ6 RNA5SP112-201ENST00000515937 99 ntBASIC2.55□□□□□ -2
ZNF540Q8NDQ6 SNORA31.6-201ENST00000516241 130 ntBASIC2.55□□□□□ -2
ZNF540Q8NDQ6 AC004944.1-201ENST00000517807 3059 ntBASIC2.55□□□□□ -2
ZNF540Q8NDQ6 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.55□□□□□ -2
ZNF540Q8NDQ6 UBTFL10-201ENST00000528532 562 ntBASIC2.55□□□□□ -2
ZNF540Q8NDQ6 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC2.55□□□□□ -2
ZNF540Q8NDQ6 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC2.55□□□□□ -2
ZNF540Q8NDQ6 AC008121.1-201ENST00000603244 268 ntBASIC2.55□□□□□ -2
ZNF540Q8NDQ6 AC098826.3-201ENST00000603823 466 ntBASIC2.55□□□□□ -2
ZNF540Q8NDQ6 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.55□□□□□ -2
ZNF540Q8NDQ6 AC005858.4-201ENST00000623191 700 ntBASIC2.55□□□□□ -2
ZNF540Q8NDQ6 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.55□□□□□ -2
ZNF540Q8NDQ6 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.55□□□□□ -2
ZNF540Q8NDQ6 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.54□□□□□ -2
ZNF540Q8NDQ6 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
ZNF540Q8NDQ6 AL359854.1-201ENST00000614203 1594 ntBASIC2.54□□□□□ -2
ZNF540Q8NDQ6 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
ZNF540Q8NDQ6 AL139276.1-201ENST00000311910 1001 ntBASIC2.54□□□□□ -2
ZNF540Q8NDQ6 RNU6-777P-201ENST00000364265 104 ntBASIC2.54□□□□□ -2
ZNF540Q8NDQ6 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.54□□□□□ -2
ZNF540Q8NDQ6 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC2.54□□□□□ -2
ZNF540Q8NDQ6 RNU6-157P-201ENST00000383957 107 ntBASIC2.54□□□□□ -2
ZNF540Q8NDQ6 MIR218-1-201ENST00000384999 110 ntBASIC2.54□□□□□ -2
ZNF540Q8NDQ6 MIR147B-201ENST00000390185 80 ntBASIC2.54□□□□□ -2
ZNF540Q8NDQ6 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.54□□□□□ -2
ZNF540Q8NDQ6 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
ZNF540Q8NDQ6 AF274854.1-201ENST00000413236 615 ntBASIC2.54□□□□□ -2
ZNF540Q8NDQ6 CYCSP48-201ENST00000417124 323 ntBASIC2.54□□□□□ -2
ZNF540Q8NDQ6 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.54□□□□□ -2
ZNF540Q8NDQ6 EIF4EP4-201ENST00000424916 578 ntBASIC2.54□□□□□ -2
ZNF540Q8NDQ6 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 117.7 ms