Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC3.24□□□□□ -1.89
CLIP4Q8N3C7 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.24□□□□□ -1.89
CLIP4Q8N3C7 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.24□□□□□ -1.89
CLIP4Q8N3C7 MIR4703-201ENST00000577728 79 ntBASIC3.24□□□□□ -1.89
CLIP4Q8N3C7 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.24□□□□□ -1.89
CLIP4Q8N3C7 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.24□□□□□ -1.89
CLIP4Q8N3C7 AC087045.1-201ENST00000605856 382 ntBASIC3.24□□□□□ -1.89
CLIP4Q8N3C7 RNU6-89P-201ENST00000606519 100 ntBASIC3.24□□□□□ -1.89
CLIP4Q8N3C7 AC093913.1-201ENST00000614178 329 ntBASIC3.24□□□□□ -1.89
CLIP4Q8N3C7 AC004696.1-201ENST00000614345 607 ntBASIC3.24□□□□□ -1.89
CLIP4Q8N3C7 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.24□□□□□ -1.89
CLIP4Q8N3C7 AL136221.1-201ENST00000621449 509 ntBASIC3.24□□□□□ -1.89
CLIP4Q8N3C7 AC005858.4-201ENST00000623191 700 ntBASIC3.24□□□□□ -1.89
CLIP4Q8N3C7 AC112200.1-201ENST00000625015 234 ntBASIC3.24□□□□□ -1.89
CLIP4Q8N3C7 SNORA50A-202ENST00000629536 136 ntBASIC3.24□□□□□ -1.89
CLIP4Q8N3C7 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CLIP4Q8N3C7 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
CLIP4Q8N3C7 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
CLIP4Q8N3C7 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
CLIP4Q8N3C7 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CLIP4Q8N3C7 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.24□□□□□ -1.89
CLIP4Q8N3C7 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CLIP4Q8N3C7 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CLIP4Q8N3C7 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CLIP4Q8N3C7 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 AL139276.1-201ENST00000311910 1001 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 Y_RNA.231-201ENST00000364358 102 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 RNA5SP479-201ENST00000364858 117 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 RNA5SP189-201ENST00000364920 115 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 SNORD115-7-201ENST00000365306 82 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 RNU6-61P-201ENST00000365528 109 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 RNU4-20P-201ENST00000365601 151 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 RNU6-38P-201ENST00000384085 107 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 RNU6-882P-201ENST00000391025 103 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 AL359634.1-202ENST00000404721 284 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 TXNP7-201ENST00000406296 293 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 Y_RNA.615-201ENST00000410769 117 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 RNA5SP31-201ENST00000411144 127 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 ATP5A1P2-201ENST00000412323 255 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 AL353678.1-201ENST00000422735 741 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 RAC1P6-201ENST00000423911 575 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 ERLEC1P1-201ENST00000433806 578 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 RPL23AP22-201ENST00000437556 453 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 AL357552.1-201ENST00000445254 415 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 RNU6-333P-201ENST00000459117 107 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 RN7SL432P-201ENST00000484057 298 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 RNU6-1073P-201ENST00000517182 106 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 AC107953.1-201ENST00000522216 297 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 OR5D17P-201ENST00000531492 978 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 AC093012.1-202ENST00000549403 582 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 AC078814.3-201ENST00000553036 491 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 BNIP3P5-201ENST00000562290 498 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 VN1R80P-201ENST00000597126 338 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 AL670379.6-201ENST00000603753 252 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 AL670379.11-201ENST00000604059 253 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 AC008162.1-201ENST00000604718 254 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 AL670379.1-201ENST00000604752 252 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 AL670379.5-201ENST00000605253 252 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 AL670379.12-201ENST00000605291 253 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 AL670379.8-201ENST00000605353 252 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 AL670379.7-201ENST00000605823 252 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 AC009233.1-201ENST00000616477 371 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 AC009248.2-201ENST00000619826 254 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 AL589994.2-201ENST00000621124 579 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 AP003355.3-201ENST00000623465 114 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 AC058791.1-201ENST00000608412 3198 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 MTND4P14-201ENST00000435799 1354 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 MTND4P35-201ENST00000604257 1375 ntBASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
CLIP4Q8N3C7 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CLIP4Q8N3C7 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CLIP4Q8N3C7 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CLIP4Q8N3C7 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CLIP4Q8N3C7 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CLIP4Q8N3C7 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.22□□□□□ -1.89
CLIP4Q8N3C7 RNU6-600P-201ENST00000362524 99 ntBASIC3.22□□□□□ -1.89
CLIP4Q8N3C7 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.22□□□□□ -1.89
CLIP4Q8N3C7 RNU6-701P-201ENST00000384059 107 ntBASIC3.22□□□□□ -1.89
CLIP4Q8N3C7 RNU6-1181P-201ENST00000384191 106 ntBASIC3.22□□□□□ -1.89
CLIP4Q8N3C7 Y_RNA.509-201ENST00000384506 99 ntBASIC3.22□□□□□ -1.89
CLIP4Q8N3C7 Y_RNA.576-201ENST00000384781 102 ntBASIC3.22□□□□□ -1.89
CLIP4Q8N3C7 RNU6-510P-201ENST00000391239 108 ntBASIC3.22□□□□□ -1.89
CLIP4Q8N3C7 AL356432.1-201ENST00000405809 419 ntBASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 114.6 ms