Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS53Q5VIR6 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC4.03□□□□□ -1.76
VPS53Q5VIR6 Y_RNA.22-201ENST00000362492 102 ntBASIC4.03□□□□□ -1.76
VPS53Q5VIR6 Y_RNA.157-201ENST00000363638 102 ntBASIC4.03□□□□□ -1.76
VPS53Q5VIR6 Y_RNA.367-201ENST00000365544 101 ntBASIC4.03□□□□□ -1.76
VPS53Q5VIR6 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
VPS53Q5VIR6 RNU6-516P-201ENST00000411381 104 ntBASIC4.03□□□□□ -1.76
VPS53Q5VIR6 AC126124.2-201ENST00000413542 321 ntBASIC4.03□□□□□ -1.76
VPS53Q5VIR6 AL356968.1-201ENST00000416622 474 ntBASIC4.03□□□□□ -1.76
VPS53Q5VIR6 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC4.03□□□□□ -1.76
VPS53Q5VIR6 AL451062.2-201ENST00000427515 271 ntBASIC4.03□□□□□ -1.76
VPS53Q5VIR6 AC005300.1-201ENST00000428401 373 ntBASIC4.03□□□□□ -1.76
VPS53Q5VIR6 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC4.03□□□□□ -1.76
VPS53Q5VIR6 UBE2V1P7-201ENST00000446395 340 ntBASIC4.03□□□□□ -1.76
VPS53Q5VIR6 PMCHL2-203ENST00000457791 237 ntBASIC4.03□□□□□ -1.76
VPS53Q5VIR6 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC4.03□□□□□ -1.76
VPS53Q5VIR6 RPS20P20-201ENST00000460498 340 ntBASIC4.03□□□□□ -1.76
VPS53Q5VIR6 AC034236.1-201ENST00000469891 373 ntBASIC4.03□□□□□ -1.76
VPS53Q5VIR6 AL049830.2-201ENST00000480072 201 ntBASIC4.03□□□□□ -1.76
VPS53Q5VIR6 AC114786.4-201ENST00000508771 728 ntBASIC4.03□□□□□ -1.76
VPS53Q5VIR6 LRRC34P2-201ENST00000514850 553 ntBASIC4.03□□□□□ -1.76
VPS53Q5VIR6 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS53Q5VIR6 SNORD60.2-201ENST00000516883 86 ntBASIC4.03□□□□□ -1.76
VPS53Q5VIR6 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC4.03□□□□□ -1.76
VPS53Q5VIR6 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.03□□□□□ -1.76
VPS53Q5VIR6 MED28P6-201ENST00000558776 231 ntBASIC4.03□□□□□ -1.76
VPS53Q5VIR6 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC4.03□□□□□ -1.76
VPS53Q5VIR6 AC005261.5-201ENST00000596280 355 ntBASIC4.03□□□□□ -1.76
VPS53Q5VIR6 AC024220.1-201ENST00000603675 484 ntBASIC4.03□□□□□ -1.76
VPS53Q5VIR6 AL158211.4-201ENST00000606988 584 ntBASIC4.03□□□□□ -1.76
VPS53Q5VIR6 AC019176.2-201ENST00000611579 315 ntBASIC4.03□□□□□ -1.76
VPS53Q5VIR6 AC084757.4-201ENST00000616350 526 ntBASIC4.03□□□□□ -1.76
VPS53Q5VIR6 AL603758.1-201ENST00000618654 241 ntBASIC4.03□□□□□ -1.76
VPS53Q5VIR6 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS53Q5VIR6 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
VPS53Q5VIR6 AC006020.1-201ENST00000420179 1854 ntBASIC4.03□□□□□ -1.77
VPS53Q5VIR6 PAPPA-AS1-201ENST00000445861 2450 ntBASIC4.02□□□□□ -1.77
VPS53Q5VIR6 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC4.02□□□□□ -1.77
VPS53Q5VIR6 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
VPS53Q5VIR6 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS53Q5VIR6 RNU1-70P-201ENST00000362618 164 ntBASIC4.02□□□□□ -1.77
VPS53Q5VIR6 RNU6-637P-201ENST00000384050 107 ntBASIC4.02□□□□□ -1.77
VPS53Q5VIR6 RNU6-432P-201ENST00000384196 109 ntBASIC4.02□□□□□ -1.77
VPS53Q5VIR6 RNVU1-14-201ENST00000384770 164 ntBASIC4.02□□□□□ -1.77
VPS53Q5VIR6 SSXP9-201ENST00000417503 292 ntBASIC4.02□□□□□ -1.77
VPS53Q5VIR6 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS53Q5VIR6 RN7SL330P-201ENST00000469709 307 ntBASIC4.02□□□□□ -1.77
VPS53Q5VIR6 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC4.02□□□□□ -1.77
VPS53Q5VIR6 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS53Q5VIR6 FCF1P8-201ENST00000510322 597 ntBASIC4.02□□□□□ -1.77
VPS53Q5VIR6 AC105417.1-201ENST00000514691 285 ntBASIC4.02□□□□□ -1.77
VPS53Q5VIR6 RNU7-51P-201ENST00000516560 62 ntBASIC4.02□□□□□ -1.77
VPS53Q5VIR6 HMGN1P28-201ENST00000521340 364 ntBASIC4.02□□□□□ -1.77
VPS53Q5VIR6 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC4.02□□□□□ -1.77
VPS53Q5VIR6 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS53Q5VIR6 AC128657.1-201ENST00000549459 145 ntBASIC4.02□□□□□ -1.77
VPS53Q5VIR6 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC4.02□□□□□ -1.77
VPS53Q5VIR6 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC4.02□□□□□ -1.77
VPS53Q5VIR6 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS53Q5VIR6 AC074050.1-201ENST00000563247 211 ntBASIC4.02□□□□□ -1.77
VPS53Q5VIR6 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC4.02□□□□□ -1.77
VPS53Q5VIR6 AL117336.2-201ENST00000602435 335 ntBASIC4.02□□□□□ -1.77
VPS53Q5VIR6 AC006557.5-201ENST00000603126 811 ntBASIC4.02□□□□□ -1.77
VPS53Q5VIR6 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS53Q5VIR6 AF117829.1-206ENST00000621883 3802 ntBASIC4.02□□□□□ -1.77
VPS53Q5VIR6 AC093648.1-201ENST00000623546 606 ntBASIC4.02□□□□□ -1.77
VPS53Q5VIR6 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS53Q5VIR6 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC4.02□□□□□ -1.77
VPS53Q5VIR6 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
VPS53Q5VIR6 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
VPS53Q5VIR6 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC4.01□□□□□ -1.77
VPS53Q5VIR6 SNORA63.1-201ENST00000362493 131 ntBASIC4.01□□□□□ -1.77
VPS53Q5VIR6 RNU6-223P-201ENST00000362830 107 ntBASIC4.01□□□□□ -1.77
VPS53Q5VIR6 Y_RNA.61-201ENST00000362835 102 ntBASIC4.01□□□□□ -1.77
VPS53Q5VIR6 Y_RNA.86-201ENST00000363020 111 ntBASIC4.01□□□□□ -1.77
VPS53Q5VIR6 Y_RNA.255-201ENST00000364581 97 ntBASIC4.01□□□□□ -1.77
VPS53Q5VIR6 MIR454-201ENST00000390180 115 ntBASIC4.01□□□□□ -1.77
VPS53Q5VIR6 AC063979.1-201ENST00000415539 377 ntBASIC4.01□□□□□ -1.77
VPS53Q5VIR6 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC4.01□□□□□ -1.77
VPS53Q5VIR6 OR2AS1P-201ENST00000427827 319 ntBASIC4.01□□□□□ -1.77
VPS53Q5VIR6 OR4K11P-201ENST00000431829 904 ntBASIC4.01□□□□□ -1.77
VPS53Q5VIR6 AC005094.1-201ENST00000440420 368 ntBASIC4.01□□□□□ -1.77
VPS53Q5VIR6 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC4.01□□□□□ -1.77
VPS53Q5VIR6 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC4.01□□□□□ -1.77
VPS53Q5VIR6 CACYBPP2-201ENST00000453625 678 ntBASIC4.01□□□□□ -1.77
VPS53Q5VIR6 RPL21P10-201ENST00000463521 490 ntBASIC4.01□□□□□ -1.77
VPS53Q5VIR6 AC091153.1-201ENST00000466297 402 ntBASIC4.01□□□□□ -1.77
VPS53Q5VIR6 GMFBP1-201ENST00000467831 427 ntBASIC4.01□□□□□ -1.77
VPS53Q5VIR6 RPS23P3-201ENST00000470993 430 ntBASIC4.01□□□□□ -1.77
VPS53Q5VIR6 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC4.01□□□□□ -1.77
VPS53Q5VIR6 AC233702.1-201ENST00000482905 502 ntBASIC4.01□□□□□ -1.77
VPS53Q5VIR6 AL163973.1-201ENST00000484753 577 ntBASIC4.01□□□□□ -1.77
VPS53Q5VIR6 AC135721.1-201ENST00000497954 479 ntBASIC4.01□□□□□ -1.77
VPS53Q5VIR6 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC4.01□□□□□ -1.77
VPS53Q5VIR6 AC114797.1-201ENST00000514003 728 ntBASIC4.01□□□□□ -1.77
VPS53Q5VIR6 RNA5SP401-201ENST00000515920 127 ntBASIC4.01□□□□□ -1.77
VPS53Q5VIR6 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC4.01□□□□□ -1.77
VPS53Q5VIR6 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC4.01□□□□□ -1.77
VPS53Q5VIR6 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
VPS53Q5VIR6 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms