Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 AC012669.1-201ENST00000603209 283 ntBASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC1.7□□□□□ -2.14
CCDC88AQ3V6T2 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
CCDC88AQ3V6T2 AC009902.3-201ENST00000606235 2172 ntBASIC1.7□□□□□ -2.14
CCDC88AQ3V6T2 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC1.7□□□□□ -2.14
CCDC88AQ3V6T2 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
CCDC88AQ3V6T2 RNU6-1080P-201ENST00000383982 107 ntBASIC1.7□□□□□ -2.14
CCDC88AQ3V6T2 AL592310.1-201ENST00000414330 671 ntBASIC1.7□□□□□ -2.14
CCDC88AQ3V6T2 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC1.7□□□□□ -2.14
CCDC88AQ3V6T2 TRIM60P13-201ENST00000432350 1283 ntBASIC1.7□□□□□ -2.14
CCDC88AQ3V6T2 SNRPGP6-201ENST00000451124 220 ntBASIC1.7□□□□□ -2.14
CCDC88AQ3V6T2 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC1.7□□□□□ -2.14
CCDC88AQ3V6T2 IGJP1-201ENST00000522682 475 ntBASIC1.7□□□□□ -2.14
CCDC88AQ3V6T2 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC1.7□□□□□ -2.14
CCDC88AQ3V6T2 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC1.7□□□□□ -2.14
CCDC88AQ3V6T2 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC1.7□□□□□ -2.14
CCDC88AQ3V6T2 AC022662.1-201ENST00000580252 331 ntBASIC1.7□□□□□ -2.14
CCDC88AQ3V6T2 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.7□□□□□ -2.14
CCDC88AQ3V6T2 MIR4658-201ENST00000584344 65 ntBASIC1.7□□□□□ -2.14
CCDC88AQ3V6T2 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC1.7□□□□□ -2.14
CCDC88AQ3V6T2 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.7□□□□□ -2.14
CCDC88AQ3V6T2 AC073968.1-201ENST00000618594 637 ntBASIC1.7□□□□□ -2.14
CCDC88AQ3V6T2 MIR6788-201ENST00000618842 66 ntBASIC1.7□□□□□ -2.14
CCDC88AQ3V6T2 MIR6130-201ENST00000619419 109 ntBASIC1.7□□□□□ -2.14
CCDC88AQ3V6T2 AL031601.2-202ENST00000622650 282 ntBASIC1.7□□□□□ -2.14
CCDC88AQ3V6T2 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC1.7□□□□□ -2.14
CCDC88AQ3V6T2 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
CCDC88AQ3V6T2 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.7□□□□□ -2.14
CCDC88AQ3V6T2 RNU6-374P-201ENST00000364146 108 ntBASIC1.69□□□□□ -2.14
CCDC88AQ3V6T2 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC1.69□□□□□ -2.14
CCDC88AQ3V6T2 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC1.69□□□□□ -2.14
CCDC88AQ3V6T2 TAAR7P-201ENST00000436141 242 ntBASIC1.69□□□□□ -2.14
CCDC88AQ3V6T2 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.69□□□□□ -2.14
CCDC88AQ3V6T2 NAA50-206ENST00000493454 964 ntTSL 2 BASIC1.69□□□□□ -2.14
CCDC88AQ3V6T2 RNU6-798P-201ENST00000516912 103 ntBASIC1.69□□□□□ -2.14
CCDC88AQ3V6T2 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.69□□□□□ -2.14
CCDC88AQ3V6T2 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC1.69□□□□□ -2.14
CCDC88AQ3V6T2 HMGB1P14-201ENST00000557424 591 ntBASIC1.69□□□□□ -2.14
CCDC88AQ3V6T2 SNORD39.3-201ENST00000584451 71 ntBASIC1.69□□□□□ -2.14
CCDC88AQ3V6T2 AP003973.1-201ENST00000604639 691 ntBASIC1.69□□□□□ -2.14
CCDC88AQ3V6T2 AC025594.3-201ENST00000613068 790 ntBASIC1.69□□□□□ -2.14
CCDC88AQ3V6T2 AC083806.3-201ENST00000614016 455 ntBASIC1.69□□□□□ -2.14
CCDC88AQ3V6T2 U6.101-201ENST00000637707 76 ntBASIC1.69□□□□□ -2.14
CCDC88AQ3V6T2 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.69□□□□□ -2.14
CCDC88AQ3V6T2 MTND4P27-201ENST00000450813 1354 ntBASIC1.69□□□□□ -2.14
CCDC88AQ3V6T2 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.69□□□□□ -2.14
CCDC88AQ3V6T2 RNU6-997P-201ENST00000384725 107 ntBASIC1.69□□□□□ -2.14
CCDC88AQ3V6T2 RPS12P24-201ENST00000412619 387 ntBASIC1.69□□□□□ -2.14
CCDC88AQ3V6T2 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC1.69□□□□□ -2.14
CCDC88AQ3V6T2 AC022447.3-201ENST00000506865 495 ntBASIC1.69□□□□□ -2.14
CCDC88AQ3V6T2 AC016957.1-201ENST00000534895 309 ntBASIC1.69□□□□□ -2.14
CCDC88AQ3V6T2 AC015688.2-201ENST00000584523 262 ntBASIC1.69□□□□□ -2.14
CCDC88AQ3V6T2 AL031176.1-201ENST00000604554 466 ntBASIC1.69□□□□□ -2.14
CCDC88AQ3V6T2 SDR42E1P2-201ENST00000614861 481 ntBASIC1.69□□□□□ -2.14
CCDC88AQ3V6T2 SDR42E1P4-201ENST00000620894 481 ntBASIC1.69□□□□□ -2.14
CCDC88AQ3V6T2 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.69□□□□□ -2.14
CCDC88AQ3V6T2 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC1.69□□□□□ -2.14
CCDC88AQ3V6T2 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.69□□□□□ -2.14
CCDC88AQ3V6T2 RNU6-650P-201ENST00000365658 111 ntBASIC1.68□□□□□ -2.14
CCDC88AQ3V6T2 RNU6-796P-201ENST00000391086 107 ntBASIC1.68□□□□□ -2.14
CCDC88AQ3V6T2 AL023807.1-201ENST00000407932 359 ntBASIC1.68□□□□□ -2.14
CCDC88AQ3V6T2 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC1.68□□□□□ -2.14
CCDC88AQ3V6T2 AC009296.1-201ENST00000443146 155 ntBASIC1.68□□□□□ -2.14
CCDC88AQ3V6T2 AC087343.1-201ENST00000477341 475 ntBASIC1.68□□□□□ -2.14
CCDC88AQ3V6T2 MTCYBP18-201ENST00000501056 747 ntBASIC1.68□□□□□ -2.14
CCDC88AQ3V6T2 AC084024.2-201ENST00000503480 791 ntBASIC1.68□□□□□ -2.14
CCDC88AQ3V6T2 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC1.68□□□□□ -2.14
CCDC88AQ3V6T2 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.68□□□□□ -2.14
CCDC88AQ3V6T2 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC1.68□□□□□ -2.14
CCDC88AQ3V6T2 RPL21P5-201ENST00000554662 472 ntBASIC1.68□□□□□ -2.14
CCDC88AQ3V6T2 MTCO1P40-201ENST00000574371 625 ntBASIC1.68□□□□□ -2.14
CCDC88AQ3V6T2 MIR3122-201ENST00000577243 73 ntBASIC1.68□□□□□ -2.14
CCDC88AQ3V6T2 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC1.68□□□□□ -2.14
CCDC88AQ3V6T2 FAM106DP-201ENST00000586416 501 ntBASIC1.68□□□□□ -2.14
CCDC88AQ3V6T2 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC1.68□□□□□ -2.14
CCDC88AQ3V6T2 DUXAP11-201ENST00000603858 526 ntBASIC1.68□□□□□ -2.14
CCDC88AQ3V6T2 AC126118.1-201ENST00000607744 628 ntBASIC1.68□□□□□ -2.14
CCDC88AQ3V6T2 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
CCDC88AQ3V6T2 RMST_10.1-201ENST00000616309 154 ntBASIC1.68□□□□□ -2.14
CCDC88AQ3V6T2 uc_338.12-201ENST00000616344 181 ntBASIC1.68□□□□□ -2.14
CCDC88AQ3V6T2 AL022578.1-201ENST00000439330 1433 ntBASIC1.68□□□□□ -2.14
CCDC88AQ3V6T2 MTCO1P23-201ENST00000415223 1526 ntBASIC1.68□□□□□ -2.14
CCDC88AQ3V6T2 AC009812.4-201ENST00000569134 1805 ntBASIC1.68□□□□□ -2.14
CCDC88AQ3V6T2 AC016716.1-201ENST00000265882 708 ntBASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 SNORD56.4-201ENST00000363883 71 ntBASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 FAM204CP-201ENST00000424489 642 ntBASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 AL512661.1-201ENST00000434586 1253 ntBASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 AL078601.1-201ENST00000444542 271 ntBASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 RPS27P26-201ENST00000494583 239 ntBASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 AC026801.1-201ENST00000497178 464 ntBASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 MRPS36P2-201ENST00000512569 299 ntBASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 RNU1-104P-201ENST00000517280 175 ntBASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 HSPA8P13-201ENST00000523715 472 ntBASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 SULT1C2P1-202ENST00000562418 459 ntBASIC1.67□□□□□ -2.14
CCDC88AQ3V6T2 AC023813.2-201ENST00000564321 469 ntBASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms