Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 MIR4287-201ENST00000579398 78 ntBASIC1.34□□□□□ -2.2
CUX1P39880 AL713998.2-201ENST00000604538 1198 ntBASIC1.34□□□□□ -2.2
CUX1P39880 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC1.34□□□□□ -2.2
CUX1P39880 MIR6864-201ENST00000617935 70 ntBASIC1.34□□□□□ -2.2
CUX1P39880 VTRNA1-3-201ENST00000365645 89 ntBASIC1.33□□□□□ -2.2
CUX1P39880 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC1.33□□□□□ -2.2
CUX1P39880 RNU6-193P-201ENST00000410977 107 ntBASIC1.33□□□□□ -2.2
CUX1P39880 CR848007.2-201ENST00000424918 787 ntBASIC1.33□□□□□ -2.2
CUX1P39880 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.33□□□□□ -2.2
CUX1P39880 ZNF965P-201ENST00000432501 817 ntBASIC1.33□□□□□ -2.2
CUX1P39880 MIR2909-201ENST00000617113 69 ntBASIC1.33□□□□□ -2.2
CUX1P39880 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC1.32□□□□□ -2.2
CUX1P39880 ZBTB8OSP1-201ENST00000342688 498 ntBASIC1.32□□□□□ -2.2
CUX1P39880 RNU6-115P-201ENST00000364310 107 ntBASIC1.32□□□□□ -2.2
CUX1P39880 RNA5SP193-201ENST00000410353 107 ntBASIC1.32□□□□□ -2.2
CUX1P39880 RNA5SP127-201ENST00000411051 133 ntBASIC1.32□□□□□ -2.2
CUX1P39880 RNA5SP450-201ENST00000411206 102 ntBASIC1.32□□□□□ -2.2
CUX1P39880 RPL21P32-201ENST00000419877 477 ntBASIC1.32□□□□□ -2.2
CUX1P39880 MTCYBP24-201ENST00000420387 1106 ntBASIC1.32□□□□□ -2.2
CUX1P39880 RPL7P30-201ENST00000420888 709 ntBASIC1.32□□□□□ -2.2
CUX1P39880 AL358176.2-201ENST00000425769 204 ntBASIC1.32□□□□□ -2.2
CUX1P39880 AC244035.1-201ENST00000430042 390 ntBASIC1.32□□□□□ -2.2
CUX1P39880 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC1.32□□□□□ -2.2
CUX1P39880 AC118469.1-201ENST00000442943 488 ntBASIC1.32□□□□□ -2.2
CUX1P39880 ANKRD26P4-201ENST00000455755 950 ntBASIC1.32□□□□□ -2.2
CUX1P39880 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.32□□□□□ -2.2
CUX1P39880 AC025423.2-201ENST00000537570 439 ntBASIC1.32□□□□□ -2.2
CUX1P39880 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC1.32□□□□□ -2.2
CUX1P39880 MTND4LP24-201ENST00000572277 291 ntBASIC1.32□□□□□ -2.2
CUX1P39880 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC1.32□□□□□ -2.2
CUX1P39880 AC092474.3-201ENST00000603022 568 ntBASIC1.32□□□□□ -2.2
CUX1P39880 AC015849.6-201ENST00000605454 474 ntBASIC1.32□□□□□ -2.2
CUX1P39880 AC018755.4-201ENST00000619715 454 ntBASIC1.32□□□□□ -2.2
CUX1P39880 RPS4XP3-201ENST00000398541 413 ntBASIC1.31□□□□□ -2.2
CUX1P39880 AL356432.1-201ENST00000405809 419 ntBASIC1.31□□□□□ -2.2
CUX1P39880 SNRPGP6-201ENST00000451124 220 ntBASIC1.31□□□□□ -2.2
CUX1P39880 TRGVB-201ENST00000453257 471 ntBASIC1.31□□□□□ -2.2
CUX1P39880 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC1.31□□□□□ -2.2
CUX1P39880 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC1.31□□□□□ -2.2
CUX1P39880 OR1M4P-201ENST00000589199 287 ntBASIC1.31□□□□□ -2.2
CUX1P39880 AC091304.6-201ENST00000619761 202 ntBASIC1.31□□□□□ -2.2
CUX1P39880 AC068880.5-201ENST00000624331 290 ntBASIC1.31□□□□□ -2.2
CUX1P39880 MIR6086-201ENST00000638065 55 ntBASIC1.31□□□□□ -2.2
CUX1P39880 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC1.31□□□□□ -2.2
CUX1P39880 MTND4P12-201ENST00000498999 1377 ntBASIC1.31□□□□□ -2.2
CUX1P39880 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC1.3□□□□□ -2.2
CUX1P39880 SNORD114-2-201ENST00000363953 78 ntBASIC1.3□□□□□ -2.2
CUX1P39880 RNU2-21P-201ENST00000410368 188 ntBASIC1.3□□□□□ -2.2
CUX1P39880 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC1.3□□□□□ -2.2
CUX1P39880 AC026801.1-201ENST00000497178 464 ntBASIC1.3□□□□□ -2.2
CUX1P39880 COL6A4P2-205ENST00000509855 506 ntBASIC1.3□□□□□ -2.2
CUX1P39880 AC012254.4-201ENST00000588843 273 ntBASIC1.3□□□□□ -2.2
CUX1P39880 SNORD14A-201ENST00000606526 91 ntBASIC1.3□□□□□ -2.2
CUX1P39880 Y_RNA.294-201ENST00000364916 102 ntBASIC1.3□□□□□ -2.2
CUX1P39880 SNORA1.3-201ENST00000384676 136 ntBASIC1.3□□□□□ -2.2
CUX1P39880 RNU6-955P-201ENST00000410497 104 ntBASIC1.3□□□□□ -2.2
CUX1P39880 NUP35P2-201ENST00000416748 943 ntBASIC1.3□□□□□ -2.2
CUX1P39880 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC1.3□□□□□ -2.2
CUX1P39880 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC1.3□□□□□ -2.2
CUX1P39880 AL121769.1-201ENST00000469473 401 ntBASIC1.3□□□□□ -2.2
CUX1P39880 EIF4EP3-201ENST00000498782 656 ntBASIC1.3□□□□□ -2.2
CUX1P39880 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC1.3□□□□□ -2.2
CUX1P39880 RNU6-970P-201ENST00000516312 107 ntBASIC1.3□□□□□ -2.2
CUX1P39880 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC1.3□□□□□ -2.2
CUX1P39880 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC1.3□□□□□ -2.2
CUX1P39880 MIR4711-201ENST00000578274 70 ntBASIC1.3□□□□□ -2.2
CUX1P39880 AL109918.3-201ENST00000603072 338 ntBASIC1.3□□□□□ -2.2
CUX1P39880 AL161629.2-201ENST00000615347 275 ntBASIC1.3□□□□□ -2.2
CUX1P39880 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC1.3□□□□□ -2.2
CUX1P39880 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC1.3□□□□□ -2.2
CUX1P39880 AC090517.3-201ENST00000625170 141 ntBASIC1.3□□□□□ -2.2
CUX1P39880 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC1.3□□□□□ -2.2
CUX1P39880 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
CUX1P39880 RNU6-666P-201ENST00000363499 107 ntBASIC1.29□□□□□ -2.2
CUX1P39880 MIR1250-201ENST00000408098 113 ntBASIC1.29□□□□□ -2.2
CUX1P39880 OSTCP8-201ENST00000445117 448 ntBASIC1.29□□□□□ -2.2
CUX1P39880 AP002371.1-201ENST00000463604 433 ntBASIC1.29□□□□□ -2.2
CUX1P39880 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC1.29□□□□□ -2.2
CUX1P39880 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.29□□□□□ -2.2
CUX1P39880 RNU6-928P-201ENST00000516876 104 ntBASIC1.29□□□□□ -2.2
CUX1P39880 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC1.29□□□□□ -2.2
CUX1P39880 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC1.29□□□□□ -2.2
CUX1P39880 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
CUX1P39880 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC1.29□□□□□ -2.2
CUX1P39880 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.29□□□□□ -2.2
CUX1P39880 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC1.29□□□□□ -2.2
CUX1P39880 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC1.29□□□□□ -2.2
CUX1P39880 ZNF37BP-203ENST00000452306 1352 ntBASIC1.29□□□□□ -2.2
CUX1P39880 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
CUX1P39880 SFR1P1-201ENST00000403720 688 ntBASIC1.28□□□□□ -2.2
CUX1P39880 RNU6-920P-201ENST00000410926 92 ntBASIC1.28□□□□□ -2.2
CUX1P39880 MTCYBP34-201ENST00000439552 670 ntBASIC1.28□□□□□ -2.2
CUX1P39880 NUCB2-202ENST00000458064 1279 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
CUX1P39880 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC1.28□□□□□ -2.2
CUX1P39880 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC1.28□□□□□ -2.2
CUX1P39880 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC1.28□□□□□ -2.2
CUX1P39880 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC1.28□□□□□ -2.2
CUX1P39880 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC1.28□□□□□ -2.2
CUX1P39880 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.28□□□□□ -2.21
CUX1P39880 AC007785.2-201ENST00000598627 1916 ntBASIC1.27□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms