Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
MSX1P28360 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
MSX1P28360 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.86□□□□□ -1.63
MSX1P28360 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
MSX1P28360 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
MSX1P28360 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC4.86□□□□□ -1.63
MSX1P28360 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC4.86□□□□□ -1.63
MSX1P28360 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.86□□□□□ -1.63
MSX1P28360 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
MSX1P28360 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC4.86□□□□□ -1.63
MSX1P28360 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
MSX1P28360 AC135776.4-201ENST00000624300 1904 ntBASIC4.86□□□□□ -1.63
MSX1P28360 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
MSX1P28360 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.86□□□□□ -1.63
MSX1P28360 U3.2-201ENST00000362981 210 ntBASIC4.86□□□□□ -1.63
MSX1P28360 Y_RNA.262-201ENST00000364641 102 ntBASIC4.86□□□□□ -1.63
MSX1P28360 RNU6-968P-201ENST00000384076 107 ntBASIC4.86□□□□□ -1.63
MSX1P28360 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC4.86□□□□□ -1.63
MSX1P28360 RNU5E-9P-201ENST00000411164 104 ntBASIC4.86□□□□□ -1.63
MSX1P28360 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC4.86□□□□□ -1.63
MSX1P28360 AC011742.1-201ENST00000431448 434 ntBASIC4.86□□□□□ -1.63
MSX1P28360 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.86□□□□□ -1.63
MSX1P28360 UQCRBP2-201ENST00000447827 297 ntBASIC4.86□□□□□ -1.63
MSX1P28360 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.86□□□□□ -1.63
MSX1P28360 RPL26P26-201ENST00000480251 434 ntBASIC4.86□□□□□ -1.63
MSX1P28360 AC004980.4-201ENST00000513375 203 ntBASIC4.86□□□□□ -1.63
MSX1P28360 RNU6-1114P-201ENST00000516022 107 ntBASIC4.86□□□□□ -1.63
MSX1P28360 SNORA31.19-201ENST00000517079 126 ntBASIC4.86□□□□□ -1.63
MSX1P28360 AC027369.5-201ENST00000533838 755 ntBASIC4.86□□□□□ -1.63
MSX1P28360 RPL21P9-201ENST00000556149 474 ntBASIC4.86□□□□□ -1.63
MSX1P28360 SNORD84-203ENST00000584275 78 ntBASIC4.86□□□□□ -1.63
MSX1P28360 AC108738.1-201ENST00000603703 237 ntBASIC4.86□□□□□ -1.63
MSX1P28360 MIR6820-201ENST00000611508 62 ntBASIC4.86□□□□□ -1.63
MSX1P28360 AL365222.1-201ENST00000614661 98 ntBASIC4.86□□□□□ -1.63
MSX1P28360 AP001005.3-201ENST00000622049 129 ntBASIC4.86□□□□□ -1.63
MSX1P28360 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC4.86□□□□□ -1.63
MSX1P28360 IGHVIII-44-202ENST00000636235 289 ntBASIC4.86□□□□□ -1.63
MSX1P28360 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
MSX1P28360 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
MSX1P28360 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC4.86□□□□□ -1.63
MSX1P28360 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.86□□□□□ -1.63
MSX1P28360 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
MSX1P28360 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
MSX1P28360 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
MSX1P28360 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
MSX1P28360 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
MSX1P28360 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC4.86□□□□□ -1.63
MSX1P28360 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
MSX1P28360 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC4.86□□□□□ -1.63
MSX1P28360 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.86□□□□□ -1.63
MSX1P28360 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
MSX1P28360 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
MSX1P28360 AC008079.2-201ENST00000623543 20396 ntBASIC4.85□□□□□ -1.63
MSX1P28360 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
MSX1P28360 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
MSX1P28360 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC4.85□□□□□ -1.63
MSX1P28360 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
MSX1P28360 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC4.85□□□□□ -1.63
MSX1P28360 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC4.85□□□□□ -1.63
MSX1P28360 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.85□□□□□ -1.63
MSX1P28360 RNU6-626P-201ENST00000363354 107 ntBASIC4.85□□□□□ -1.63
MSX1P28360 RNU6-166P-201ENST00000384371 107 ntBASIC4.85□□□□□ -1.63
MSX1P28360 RNU1-106P-201ENST00000384382 164 ntBASIC4.85□□□□□ -1.63
MSX1P28360 Y_RNA.488-201ENST00000384403 102 ntBASIC4.85□□□□□ -1.63
MSX1P28360 Y_RNA.570-201ENST00000384750 101 ntBASIC4.85□□□□□ -1.63
MSX1P28360 MIR32-201ENST00000384965 70 ntBASIC4.85□□□□□ -1.63
MSX1P28360 UBA52P6-201ENST00000399822 382 ntBASIC4.85□□□□□ -1.63
MSX1P28360 OOSP1P1-201ENST00000423265 274 ntBASIC4.85□□□□□ -1.63
MSX1P28360 AL353705.4-201ENST00000449661 238 ntBASIC4.85□□□□□ -1.63
MSX1P28360 AL389915.2-201ENST00000454576 441 ntBASIC4.85□□□□□ -1.63
MSX1P28360 AP000870.1-201ENST00000472927 406 ntBASIC4.85□□□□□ -1.63
MSX1P28360 SNRPCP2-201ENST00000504370 475 ntBASIC4.85□□□□□ -1.63
MSX1P28360 SNORD116-26-201ENST00000516006 96 ntBASIC4.85□□□□□ -1.63
MSX1P28360 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC4.85□□□□□ -1.63
MSX1P28360 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC4.85□□□□□ -1.63
MSX1P28360 IGLCOR22-2-201ENST00000605398 313 ntBASIC4.85□□□□□ -1.63
MSX1P28360 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.85□□□□□ -1.63
MSX1P28360 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC4.85□□□□□ -1.63
MSX1P28360 AC026951.1-201ENST00000559530 2459 ntBASIC4.85□□□□□ -1.63
MSX1P28360 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
MSX1P28360 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
MSX1P28360 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.85□□□□□ -1.63
MSX1P28360 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
MSX1P28360 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC4.84□□□□□ -1.63
MSX1P28360 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
MSX1P28360 AL079305.1-201ENST00000623159 3008 ntBASIC4.84□□□□□ -1.63
MSX1P28360 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
MSX1P28360 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC4.84□□□□□ -1.63
MSX1P28360 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
MSX1P28360 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
MSX1P28360 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
MSX1P28360 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
MSX1P28360 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
MSX1P28360 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
MSX1P28360 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
MSX1P28360 RNA5SP361-201ENST00000362686 118 ntBASIC4.84□□□□□ -1.63
MSX1P28360 RN7SKP103-201ENST00000363848 320 ntBASIC4.84□□□□□ -1.63
MSX1P28360 Y_RNA.245-201ENST00000364493 95 ntBASIC4.84□□□□□ -1.63
MSX1P28360 RNU6-449P-201ENST00000383914 107 ntBASIC4.84□□□□□ -1.63
MSX1P28360 Y_RNA.400-201ENST00000383963 111 ntBASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms