Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AL591704.1-201ENST00000432574 275 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 RPS15AP27-201ENST00000449183 343 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 AC087588.1-201ENST00000462203 316 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 RPL21P93-201ENST00000480465 489 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 AC078918.1-201ENST00000498515 228 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 AC110768.1-201ENST00000509222 400 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 AC023141.12-201ENST00000512399 199 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 GMPSP1-201ENST00000514075 579 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS4BO75351 SNORA19.2-201ENST00000516013 114 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 RNU6-277P-201ENST00000516272 106 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 SNORA74D-201ENST00000516404 141 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 RNU6-677P-201ENST00000516914 101 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 RNU6-840P-201ENST00000517275 65 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS4BO75351 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS4BO75351 AC090877.1-201ENST00000561418 344 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS4BO75351 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS4BO75351 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 AL138889.2-201ENST00000603883 242 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS4BO75351 AL022345.1-201ENST00000607292 135 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC3.8□□□□□ -1.8
VPS4BO75351 AC009570.1-201ENST00000609599 745 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 AC093913.1-201ENST00000614178 329 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 AL355810.1-201ENST00000614629 552 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 AL359547.2-201ENST00000615810 418 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 AL354798.1-201ENST00000622505 329 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.8□□□□□ -1.8
VPS4BO75351 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
VPS4BO75351 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS4BO75351 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
VPS4BO75351 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS4BO75351 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS4BO75351 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS4BO75351 AP004289.2-201ENST00000444413 1457 ntBASIC3.79□□□□□ -1.8
VPS4BO75351 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.79□□□□□ -1.8
VPS4BO75351 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
VPS4BO75351 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
VPS4BO75351 RNA5SP399-201ENST00000364003 117 ntBASIC3.79□□□□□ -1.8
VPS4BO75351 Y_RNA.301-201ENST00000364990 103 ntBASIC3.79□□□□□ -1.8
VPS4BO75351 RNA5SP167-201ENST00000365461 116 ntBASIC3.79□□□□□ -1.8
VPS4BO75351 RNU6-190P-201ENST00000384154 102 ntBASIC3.79□□□□□ -1.8
VPS4BO75351 SNORA9-201ENST00000384215 133 ntBASIC3.79□□□□□ -1.8
VPS4BO75351 MIR34B-201ENST00000385076 84 ntBASIC3.79□□□□□ -1.8
VPS4BO75351 AL513331.1-201ENST00000411908 397 ntBASIC3.79□□□□□ -1.8
VPS4BO75351 RAB9AP3-201ENST00000412737 573 ntBASIC3.79□□□□□ -1.8
VPS4BO75351 RPS20P15-201ENST00000412792 311 ntBASIC3.79□□□□□ -1.8
VPS4BO75351 AL691449.1-201ENST00000426570 421 ntBASIC3.79□□□□□ -1.8
VPS4BO75351 MTND1P14-201ENST00000427400 950 ntBASIC3.79□□□□□ -1.8
VPS4BO75351 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC3.79□□□□□ -1.8
VPS4BO75351 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC3.79□□□□□ -1.8
VPS4BO75351 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS4BO75351 PRPS1P1-201ENST00000445305 876 ntBASIC3.79□□□□□ -1.8
VPS4BO75351 AC104058.1-201ENST00000448028 297 ntBASIC3.79□□□□□ -1.8
VPS4BO75351 RAB9AP1-201ENST00000449393 573 ntBASIC3.79□□□□□ -1.8
VPS4BO75351 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC3.79□□□□□ -1.8
VPS4BO75351 SCARNA18-201ENST00000459004 134 ntBASIC3.79□□□□□ -1.8
VPS4BO75351 RNU6-953P-201ENST00000459154 107 ntBASIC3.79□□□□□ -1.8
VPS4BO75351 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS4BO75351 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS4BO75351 MLLT10P2-201ENST00000506434 249 ntBASIC3.79□□□□□ -1.8
VPS4BO75351 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS4BO75351 Y_RNA.689-201ENST00000516589 107 ntBASIC3.79□□□□□ -1.8
VPS4BO75351 RN7SKP209-201ENST00000516888 304 ntBASIC3.79□□□□□ -1.8
VPS4BO75351 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS4BO75351 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS4BO75351 AL355836.1-201ENST00000555951 870 ntBASIC3.79□□□□□ -1.8
VPS4BO75351 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC3.79□□□□□ -1.8
VPS4BO75351 DPPA3P3-201ENST00000603842 430 ntBASIC3.79□□□□□ -1.8
VPS4BO75351 AL353621.2-201ENST00000605340 133 ntBASIC3.79□□□□□ -1.8
VPS4BO75351 AC096577.2-201ENST00000611455 153 ntBASIC3.79□□□□□ -1.8
VPS4BO75351 AC034102.8-201ENST00000615146 484 ntBASIC3.79□□□□□ -1.8
VPS4BO75351 AC103705.1-201ENST00000619013 241 ntBASIC3.79□□□□□ -1.8
VPS4BO75351 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.79□□□□□ -1.8
VPS4BO75351 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS4BO75351 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS4BO75351 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
VPS4BO75351 AP001350.1-201ENST00000601906 1524 ntBASIC3.79□□□□□ -1.8
VPS4BO75351 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS4BO75351 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS4BO75351 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
VPS4BO75351 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.78□□□□□ -1.8
VPS4BO75351 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
VPS4BO75351 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
VPS4BO75351 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
VPS4BO75351 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
VPS4BO75351 RNU4-79P-201ENST00000362764 141 ntBASIC3.78□□□□□ -1.8
VPS4BO75351 Y_RNA.184-201ENST00000363884 108 ntBASIC3.78□□□□□ -1.8
VPS4BO75351 Y_RNA.373-201ENST00000365600 103 ntBASIC3.78□□□□□ -1.8
VPS4BO75351 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
VPS4BO75351 Y_RNA.414-201ENST00000384011 101 ntBASIC3.78□□□□□ -1.8
VPS4BO75351 Y_RNA.474-201ENST00000384341 102 ntBASIC3.78□□□□□ -1.8
VPS4BO75351 MIR634-201ENST00000385208 97 ntBASIC3.78□□□□□ -1.8
VPS4BO75351 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
VPS4BO75351 HSPE1P8-201ENST00000406997 288 ntBASIC3.78□□□□□ -1.8
VPS4BO75351 AC092809.3-201ENST00000415453 231 ntBASIC3.78□□□□□ -1.8
VPS4BO75351 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS4BO75351 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 169.1 ms