Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 RNU6-1140P-201ENST00000410517 106 ntBASIC5.06□□□□□ -1.6
USP3Q9Y6I4 CTSL3P-202ENST00000412179 788 ntBASIC5.06□□□□□ -1.6
USP3Q9Y6I4 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC5.06□□□□□ -1.6
USP3Q9Y6I4 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC5.06□□□□□ -1.6
USP3Q9Y6I4 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC5.06□□□□□ -1.6
USP3Q9Y6I4 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC5.06□□□□□ -1.6
USP3Q9Y6I4 RPL7P49-201ENST00000471402 708 ntBASIC5.06□□□□□ -1.6
USP3Q9Y6I4 MRPL42P6-201ENST00000486397 371 ntBASIC5.06□□□□□ -1.6
USP3Q9Y6I4 AL160314.1-201ENST00000490836 438 ntBASIC5.06□□□□□ -1.6
USP3Q9Y6I4 SCARNA15.2-201ENST00000516409 127 ntBASIC5.06□□□□□ -1.6
USP3Q9Y6I4 RNU6-709P-201ENST00000517257 104 ntBASIC5.06□□□□□ -1.6
USP3Q9Y6I4 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC5.06□□□□□ -1.6
USP3Q9Y6I4 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC5.06□□□□□ -1.6
USP3Q9Y6I4 MZT1P2-201ENST00000604387 248 ntBASIC5.06□□□□□ -1.6
USP3Q9Y6I4 AC037487.3-201ENST00000606668 112 ntBASIC5.06□□□□□ -1.6
USP3Q9Y6I4 FAM27B-201ENST00000610601 213 ntBASIC5.06□□□□□ -1.6
USP3Q9Y6I4 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
USP3Q9Y6I4 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
USP3Q9Y6I4 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.06□□□□□ -1.6
USP3Q9Y6I4 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC5.06□□□□□ -1.6
USP3Q9Y6I4 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.06□□□□□ -1.6
USP3Q9Y6I4 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
USP3Q9Y6I4 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
USP3Q9Y6I4 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.06□□□□□ -1.6
USP3Q9Y6I4 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC5.06□□□□□ -1.6
USP3Q9Y6I4 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC5.06□□□□□ -1.6
USP3Q9Y6I4 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC5.06□□□□□ -1.6
USP3Q9Y6I4 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.05□□□□□ -1.6
USP3Q9Y6I4 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5.05□□□□□ -1.6
USP3Q9Y6I4 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC5.05□□□□□ -1.6
USP3Q9Y6I4 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
USP3Q9Y6I4 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
USP3Q9Y6I4 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
USP3Q9Y6I4 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
USP3Q9Y6I4 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
USP3Q9Y6I4 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC5.05□□□□□ -1.6
USP3Q9Y6I4 RNU6-1159P-201ENST00000362933 107 ntBASIC5.05□□□□□ -1.6
USP3Q9Y6I4 Y_RNA.122-201ENST00000363331 96 ntBASIC5.05□□□□□ -1.6
USP3Q9Y6I4 RNY1P5-201ENST00000383890 115 ntBASIC5.05□□□□□ -1.6
USP3Q9Y6I4 MIR585-201ENST00000384887 94 ntBASIC5.05□□□□□ -1.6
USP3Q9Y6I4 MIR10A-201ENST00000385043 110 ntBASIC5.05□□□□□ -1.6
USP3Q9Y6I4 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
USP3Q9Y6I4 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC5.05□□□□□ -1.6
USP3Q9Y6I4 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC5.05□□□□□ -1.6
USP3Q9Y6I4 BX510359.2-201ENST00000417920 305 ntBASIC5.05□□□□□ -1.6
USP3Q9Y6I4 RPL21P40-201ENST00000428586 483 ntBASIC5.05□□□□□ -1.6
USP3Q9Y6I4 MTCO1P5-201ENST00000433573 344 ntBASIC5.05□□□□□ -1.6
USP3Q9Y6I4 AC005154.2-201ENST00000438110 379 ntBASIC5.05□□□□□ -1.6
USP3Q9Y6I4 AC124916.1-201ENST00000444020 547 ntBASIC5.05□□□□□ -1.6
USP3Q9Y6I4 RN7SKP276-201ENST00000516242 268 ntBASIC5.05□□□□□ -1.6
USP3Q9Y6I4 IGKV2-38-201ENST00000517443 247 ntBASIC5.05□□□□□ -1.6
USP3Q9Y6I4 CYCSP40-201ENST00000575927 294 ntBASIC5.05□□□□□ -1.6
USP3Q9Y6I4 MIR3921-201ENST00000577308 85 ntBASIC5.05□□□□□ -1.6
USP3Q9Y6I4 AC072026.1-201ENST00000605023 201 ntBASIC5.05□□□□□ -1.6
USP3Q9Y6I4 AC073657.2-201ENST00000605661 303 ntBASIC5.05□□□□□ -1.6
USP3Q9Y6I4 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
USP3Q9Y6I4 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC5.05□□□□□ -1.6
USP3Q9Y6I4 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
USP3Q9Y6I4 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC5.05□□□□□ -1.6
USP3Q9Y6I4 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
USP3Q9Y6I4 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
USP3Q9Y6I4 AC022893.2-201ENST00000564832 3296 ntBASIC5.05□□□□□ -1.6
USP3Q9Y6I4 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
USP3Q9Y6I4 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC5.04□□□□□ -1.6
USP3Q9Y6I4 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
USP3Q9Y6I4 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.04□□□□□ -1.6
USP3Q9Y6I4 AL121839.2-201ENST00000565058 6943 ntBASIC5.04□□□□□ -1.6
USP3Q9Y6I4 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
USP3Q9Y6I4 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
USP3Q9Y6I4 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
USP3Q9Y6I4 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
USP3Q9Y6I4 RNU4-9P-201ENST00000364951 139 ntBASIC5.04□□□□□ -1.6
USP3Q9Y6I4 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
USP3Q9Y6I4 MIR1290-201ENST00000408735 78 ntBASIC5.04□□□□□ -1.6
USP3Q9Y6I4 Y_RNA.602-201ENST00000410535 92 ntBASIC5.04□□□□□ -1.6
USP3Q9Y6I4 OR2AH1P-201ENST00000425717 928 ntBASIC5.04□□□□□ -1.6
USP3Q9Y6I4 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC5.04□□□□□ -1.6
USP3Q9Y6I4 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC5.04□□□□□ -1.6
USP3Q9Y6I4 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC5.04□□□□□ -1.6
USP3Q9Y6I4 AL049874.1-201ENST00000489560 388 ntBASIC5.04□□□□□ -1.6
USP3Q9Y6I4 RNU6-377P-201ENST00000515965 102 ntBASIC5.04□□□□□ -1.6
USP3Q9Y6I4 Y_RNA.683-201ENST00000516508 93 ntBASIC5.04□□□□□ -1.6
USP3Q9Y6I4 AF186190.1-201ENST00000517470 480 ntBASIC5.04□□□□□ -1.6
USP3Q9Y6I4 AC024405.2-202ENST00000532731 184 ntBASIC5.04□□□□□ -1.6
USP3Q9Y6I4 AC023575.1-201ENST00000580510 358 ntBASIC5.04□□□□□ -1.6
USP3Q9Y6I4 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC5.04□□□□□ -1.6
USP3Q9Y6I4 IGKV2OR2-2-201ENST00000605025 300 ntBASIC5.04□□□□□ -1.6
USP3Q9Y6I4 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC5.04□□□□□ -1.6
USP3Q9Y6I4 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.04□□□□□ -1.6
USP3Q9Y6I4 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
USP3Q9Y6I4 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.04□□□□□ -1.6
USP3Q9Y6I4 FAP-203ENST00000443424 2598 ntTSL 2 BASIC5.04□□□□□ -1.6
USP3Q9Y6I4 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
USP3Q9Y6I4 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC5.03□□□□□ -1.6
USP3Q9Y6I4 DHX9P1-201ENST00000436565 3076 ntBASIC5.03□□□□□ -1.6
USP3Q9Y6I4 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC5.03□□□□□ -1.6
USP3Q9Y6I4 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC5.03□□□□□ -1.6
USP3Q9Y6I4 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
USP3Q9Y6I4 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC5.03□□□□□ -1.6
USP3Q9Y6I4 Y_RNA.44-201ENST00000362676 108 ntBASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 113 ms