Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AC015917.1-201ENST00000579654 510 ntBASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 AL355598.1-201ENST00000604169 202 ntBASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 uc_338.34-201ENST00000617467 174 ntBASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 XIST_intron.1-201ENST00000619444 68 ntBASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 HSPA8P4-201ENST00000511877 1920 ntBASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 RIOK3P1-201ENST00000418778 1528 ntBASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 ASNSP3-201ENST00000451989 1306 ntBASIC5.25□□□□□ -1.57
CCDC9Q9Y3X0 AC091152.2-201ENST00000591628 2569 ntBASIC5.25□□□□□ -1.57
CCDC9Q9Y3X0 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC9Q9Y3X0 RNU6-534P-201ENST00000364877 106 ntBASIC5.25□□□□□ -1.57
CCDC9Q9Y3X0 RNU6-328P-201ENST00000390887 106 ntBASIC5.25□□□□□ -1.57
CCDC9Q9Y3X0 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC9Q9Y3X0 SNRPEP10-201ENST00000420249 274 ntBASIC5.25□□□□□ -1.57
CCDC9Q9Y3X0 MRPS10P2-201ENST00000431226 381 ntBASIC5.25□□□□□ -1.57
CCDC9Q9Y3X0 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC5.25□□□□□ -1.57
CCDC9Q9Y3X0 NEK4P1-201ENST00000433383 879 ntBASIC5.25□□□□□ -1.57
CCDC9Q9Y3X0 RPL7P28-201ENST00000437739 740 ntBASIC5.25□□□□□ -1.57
CCDC9Q9Y3X0 AC115115.1-201ENST00000449927 248 ntBASIC5.25□□□□□ -1.57
CCDC9Q9Y3X0 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC5.25□□□□□ -1.57
CCDC9Q9Y3X0 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC5.25□□□□□ -1.57
CCDC9Q9Y3X0 RNU6-1178P-201ENST00000516674 107 ntBASIC5.25□□□□□ -1.57
CCDC9Q9Y3X0 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC5.25□□□□□ -1.57
CCDC9Q9Y3X0 MDM2-233ENST00000545204 398 ntTSL 5 BASIC5.25□□□□□ -1.57
CCDC9Q9Y3X0 AL163153.1-201ENST00000554223 283 ntBASIC5.25□□□□□ -1.57
CCDC9Q9Y3X0 AC068135.2-201ENST00000569293 1028 ntBASIC5.25□□□□□ -1.57
CCDC9Q9Y3X0 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC5.25□□□□□ -1.57
CCDC9Q9Y3X0 AP000907.4-201ENST00000604143 237 ntBASIC5.25□□□□□ -1.57
CCDC9Q9Y3X0 RBM11P1-201ENST00000604951 799 ntBASIC5.25□□□□□ -1.57
CCDC9Q9Y3X0 AC068254.2-201ENST00000623938 3577 ntBASIC5.25□□□□□ -1.57
CCDC9Q9Y3X0 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC5.25□□□□□ -1.57
CCDC9Q9Y3X0 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC9Q9Y3X0 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC9Q9Y3X0 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
CCDC9Q9Y3X0 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC9Q9Y3X0 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC5.24□□□□□ -1.57
CCDC9Q9Y3X0 RNU6-884P-201ENST00000363889 107 ntBASIC5.24□□□□□ -1.57
CCDC9Q9Y3X0 MDM4-202ENST00000367180 547 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC9Q9Y3X0 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC9Q9Y3X0 MIR490-201ENST00000384865 128 ntBASIC5.24□□□□□ -1.57
CCDC9Q9Y3X0 MIR195-201ENST00000385194 87 ntBASIC5.24□□□□□ -1.57
CCDC9Q9Y3X0 EEF1A1P40-201ENST00000412883 573 ntBASIC5.24□□□□□ -1.57
CCDC9Q9Y3X0 RBMY1KP-201ENST00000423480 476 ntBASIC5.24□□□□□ -1.57
CCDC9Q9Y3X0 AC236972.1-201ENST00000433225 199 ntBASIC5.24□□□□□ -1.57
CCDC9Q9Y3X0 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC5.24□□□□□ -1.57
CCDC9Q9Y3X0 RPL37P4-201ENST00000448908 268 ntBASIC5.24□□□□□ -1.57
CCDC9Q9Y3X0 AC010099.1-201ENST00000455434 375 ntBASIC5.24□□□□□ -1.57
CCDC9Q9Y3X0 RPL23AP11-201ENST00000475260 469 ntBASIC5.24□□□□□ -1.57
CCDC9Q9Y3X0 LRRC34P2-201ENST00000514850 553 ntBASIC5.24□□□□□ -1.57
CCDC9Q9Y3X0 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC9Q9Y3X0 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC5.24□□□□□ -1.57
CCDC9Q9Y3X0 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC9Q9Y3X0 MIR8058-201ENST00000615737 89 ntBASIC5.24□□□□□ -1.57
CCDC9Q9Y3X0 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC9Q9Y3X0 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC9Q9Y3X0 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC5.24□□□□□ -1.57
CCDC9Q9Y3X0 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC5.24□□□□□ -1.57
CCDC9Q9Y3X0 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 FRG1CP-201ENST00000358464 769 ntBASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 RNA5SP50-201ENST00000363731 107 ntBASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 RNA5SP399-201ENST00000364003 117 ntBASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 U1.1-201ENST00000384101 164 ntBASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 HIST1H2APS3-201ENST00000403259 134 ntBASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 RPL21P109-201ENST00000422213 475 ntBASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 AC097713.2-201ENST00000430199 356 ntBASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 CALM1P1-201ENST00000442082 433 ntBASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 AL445433.1-201ENST00000457507 257 ntBASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 RNU7-180P-201ENST00000459240 63 ntBASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 MTCO3P38-201ENST00000468910 766 ntBASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 RN7SL601P-201ENST00000471221 293 ntBASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 AC139453.3-201ENST00000493276 369 ntBASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 RNU7-143P-201ENST00000516781 65 ntBASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 AC022695.1-201ENST00000522089 237 ntBASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 SUB1P1-201ENST00000524415 382 ntBASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 AHI1-217ENST00000534469 680 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 YPEL5P3-201ENST00000547227 352 ntBASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC5.23□□□□□ -1.57
CCDC9Q9Y3X0 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms