Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC2.59□□□□□ -1.99
FOXA2Q9Y261 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.59□□□□□ -1.99
FOXA2Q9Y261 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
FOXA2Q9Y261 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC2.59□□□□□ -1.99
FOXA2Q9Y261 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -1.99
FOXA2Q9Y261 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC2.59□□□□□ -1.99
FOXA2Q9Y261 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
FOXA2Q9Y261 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
FOXA2Q9Y261 MIR34B-201ENST00000385076 84 ntBASIC2.59□□□□□ -1.99
FOXA2Q9Y261 RPL23AP32-201ENST00000395315 459 ntBASIC2.59□□□□□ -1.99
FOXA2Q9Y261 AC092809.3-201ENST00000415453 231 ntBASIC2.59□□□□□ -1.99
FOXA2Q9Y261 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.59□□□□□ -1.99
FOXA2Q9Y261 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC2.59□□□□□ -1.99
FOXA2Q9Y261 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC2.59□□□□□ -1.99
FOXA2Q9Y261 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC2.59□□□□□ -1.99
FOXA2Q9Y261 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC2.59□□□□□ -1.99
FOXA2Q9Y261 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC2.59□□□□□ -1.99
FOXA2Q9Y261 AC092427.1-202ENST00000430569 476 ntBASIC2.59□□□□□ -1.99
FOXA2Q9Y261 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC2.59□□□□□ -1.99
FOXA2Q9Y261 HMGN2P10-201ENST00000448085 265 ntBASIC2.59□□□□□ -1.99
FOXA2Q9Y261 AC233279.1-201ENST00000455300 423 ntBASIC2.59□□□□□ -1.99
FOXA2Q9Y261 AL590639.1-201ENST00000456484 337 ntBASIC2.59□□□□□ -1.99
FOXA2Q9Y261 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC2.59□□□□□ -1.99
FOXA2Q9Y261 AC008155.2-201ENST00000464337 397 ntBASIC2.59□□□□□ -1.99
FOXA2Q9Y261 RPL7P49-201ENST00000471402 708 ntBASIC2.59□□□□□ -1.99
FOXA2Q9Y261 TRBV1-201ENST00000476502 284 ntBASIC2.59□□□□□ -1.99
FOXA2Q9Y261 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC2.59□□□□□ -1.99
FOXA2Q9Y261 SLC25A15P5-201ENST00000508033 253 ntBASIC2.59□□□□□ -1.99
FOXA2Q9Y261 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC2.59□□□□□ -1.99
FOXA2Q9Y261 Y_RNA.689-201ENST00000516589 107 ntBASIC2.59□□□□□ -1.99
FOXA2Q9Y261 RNU6-914P-201ENST00000516749 109 ntBASIC2.59□□□□□ -1.99
FOXA2Q9Y261 RNU6-703P-201ENST00000516946 107 ntBASIC2.59□□□□□ -1.99
FOXA2Q9Y261 SNORA31.18-201ENST00000517043 134 ntBASIC2.59□□□□□ -1.99
FOXA2Q9Y261 RN7SKP40-201ENST00000517211 242 ntBASIC2.59□□□□□ -1.99
FOXA2Q9Y261 SCARNA11.3-201ENST00000517276 130 ntBASIC2.59□□□□□ -1.99
FOXA2Q9Y261 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.59□□□□□ -1.99
FOXA2Q9Y261 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.59□□□□□ -1.99
FOXA2Q9Y261 AP003122.3-201ENST00000526316 255 ntBASIC2.59□□□□□ -1.99
FOXA2Q9Y261 AC084851.1-201ENST00000529105 249 ntBASIC2.59□□□□□ -1.99
FOXA2Q9Y261 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2.59□□□□□ -1.99
FOXA2Q9Y261 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC2.59□□□□□ -1.99
FOXA2Q9Y261 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC2.59□□□□□ -1.99
FOXA2Q9Y261 AC021739.1-201ENST00000559631 174 ntBASIC2.59□□□□□ -1.99
FOXA2Q9Y261 MIR4782-201ENST00000577987 79 ntBASIC2.59□□□□□ -1.99
FOXA2Q9Y261 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC2.59□□□□□ -1.99
FOXA2Q9Y261 AL161734.1-201ENST00000609720 557 ntBASIC2.59□□□□□ -1.99
FOXA2Q9Y261 AC008250.2-201ENST00000615261 205 ntBASIC2.59□□□□□ -1.99
FOXA2Q9Y261 AC025048.6-202ENST00000627667 438 ntBASIC2.59□□□□□ -1.99
FOXA2Q9Y261 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC2.59□□□□□ -1.99
FOXA2Q9Y261 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
FOXA2Q9Y261 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.59□□□□□ -2
FOXA2Q9Y261 MTND5P27-201ENST00000428871 1720 ntBASIC2.59□□□□□ -2
FOXA2Q9Y261 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.58□□□□□ -2
FOXA2Q9Y261 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC2.58□□□□□ -2
FOXA2Q9Y261 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.58□□□□□ -2
FOXA2Q9Y261 SNORA63.1-201ENST00000362493 131 ntBASIC2.58□□□□□ -2
FOXA2Q9Y261 RNU4-1-201ENST00000363925 141 ntBASIC2.58□□□□□ -2
FOXA2Q9Y261 SNORA46-201ENST00000384762 135 ntBASIC2.58□□□□□ -2
FOXA2Q9Y261 RPL21P3-201ENST00000395517 478 ntBASIC2.58□□□□□ -2
FOXA2Q9Y261 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC2.58□□□□□ -2
FOXA2Q9Y261 AC127391.1-201ENST00000411737 98 ntBASIC2.58□□□□□ -2
FOXA2Q9Y261 AC080125.1-201ENST00000414888 684 ntBASIC2.58□□□□□ -2
FOXA2Q9Y261 AL158156.1-201ENST00000422509 473 ntBASIC2.58□□□□□ -2
FOXA2Q9Y261 CYCSP46-201ENST00000423569 204 ntBASIC2.58□□□□□ -2
FOXA2Q9Y261 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC2.58□□□□□ -2
FOXA2Q9Y261 RPL23AP30-201ENST00000432419 501 ntBASIC2.58□□□□□ -2
FOXA2Q9Y261 RPS24P1-201ENST00000438550 371 ntBASIC2.58□□□□□ -2
FOXA2Q9Y261 UQCRHP3-201ENST00000451503 251 ntBASIC2.58□□□□□ -2
FOXA2Q9Y261 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC2.58□□□□□ -2
FOXA2Q9Y261 AC146507.2-201ENST00000460608 476 ntBASIC2.58□□□□□ -2
FOXA2Q9Y261 GZMAP1-201ENST00000503054 631 ntBASIC2.58□□□□□ -2
FOXA2Q9Y261 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC2.58□□□□□ -2
FOXA2Q9Y261 RNU5F-8P-201ENST00000515941 111 ntBASIC2.58□□□□□ -2
FOXA2Q9Y261 SNORD19.2-201ENST00000516978 73 ntBASIC2.58□□□□□ -2
FOXA2Q9Y261 RNU6-1183P-201ENST00000517054 60 ntBASIC2.58□□□□□ -2
FOXA2Q9Y261 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC2.58□□□□□ -2
FOXA2Q9Y261 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.58□□□□□ -2
FOXA2Q9Y261 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC2.58□□□□□ -2
FOXA2Q9Y261 AC006199.1-201ENST00000548728 219 ntBASIC2.58□□□□□ -2
FOXA2Q9Y261 AL121821.2-201ENST00000556081 394 ntBASIC2.58□□□□□ -2
FOXA2Q9Y261 MTND3P12-201ENST00000559068 328 ntBASIC2.58□□□□□ -2
FOXA2Q9Y261 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.58□□□□□ -2
FOXA2Q9Y261 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC2.58□□□□□ -2
FOXA2Q9Y261 AC090616.3-201ENST00000582184 217 ntBASIC2.58□□□□□ -2
FOXA2Q9Y261 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.58□□□□□ -2
FOXA2Q9Y261 AL133173.2-201ENST00000614270 90 ntBASIC2.58□□□□□ -2
FOXA2Q9Y261 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.58□□□□□ -2
FOXA2Q9Y261 ANKRD20A17P-201ENST00000511745 1330 ntBASIC2.58□□□□□ -2
FOXA2Q9Y261 RNU6-461P-201ENST00000364195 107 ntBASIC2.57□□□□□ -2
FOXA2Q9Y261 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC2.57□□□□□ -2
FOXA2Q9Y261 SNORA20.2-201ENST00000383922 131 ntBASIC2.57□□□□□ -2
FOXA2Q9Y261 U3.26-201ENST00000391236 204 ntBASIC2.57□□□□□ -2
FOXA2Q9Y261 SNORA26.8-201ENST00000391306 124 ntBASIC2.57□□□□□ -2
FOXA2Q9Y261 CASP3-203ENST00000393588 677 ntTSL 4 BASIC2.57□□□□□ -2
FOXA2Q9Y261 AL513475.1-201ENST00000406602 315 ntBASIC2.57□□□□□ -2
FOXA2Q9Y261 RPS3AP3-201ENST00000411933 242 ntBASIC2.57□□□□□ -2
FOXA2Q9Y261 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC2.57□□□□□ -2
FOXA2Q9Y261 BX682237.1-201ENST00000415016 335 ntBASIC2.57□□□□□ -2
FOXA2Q9Y261 AC245054.2-201ENST00000415639 319 ntBASIC2.57□□□□□ -2
FOXA2Q9Y261 AL591704.1-201ENST00000432574 275 ntBASIC2.57□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms