Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 THUMPD3P1-201ENST00000506556 1480 ntBASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 AC107081.3-201ENST00000612715 2034 ntBASIC5.52□□□□□ -1.53
COL17A1Q9UMD9 RNU6-472P-201ENST00000384299 107 ntBASIC5.52□□□□□ -1.53
COL17A1Q9UMD9 RNU6-921P-201ENST00000384361 107 ntBASIC5.52□□□□□ -1.53
COL17A1Q9UMD9 Y_RNA.645-201ENST00000391229 102 ntBASIC5.52□□□□□ -1.53
COL17A1Q9UMD9 ARF4P3-201ENST00000397387 509 ntBASIC5.52□□□□□ -1.53
COL17A1Q9UMD9 DHFRP6-201ENST00000401776 268 ntBASIC5.52□□□□□ -1.53
COL17A1Q9UMD9 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC5.52□□□□□ -1.53
COL17A1Q9UMD9 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC5.52□□□□□ -1.53
COL17A1Q9UMD9 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC5.52□□□□□ -1.53
COL17A1Q9UMD9 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC5.52□□□□□ -1.53
COL17A1Q9UMD9 SNORD127-201ENST00000458892 86 ntBASIC5.52□□□□□ -1.53
COL17A1Q9UMD9 RNU6-1023P-201ENST00000516137 106 ntBASIC5.52□□□□□ -1.53
COL17A1Q9UMD9 SNORA81.3-201ENST00000517283 198 ntBASIC5.52□□□□□ -1.53
COL17A1Q9UMD9 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL17A1Q9UMD9 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC5.52□□□□□ -1.53
COL17A1Q9UMD9 HMGB1P6-201ENST00000569046 646 ntBASIC5.52□□□□□ -1.53
COL17A1Q9UMD9 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC5.52□□□□□ -1.53
COL17A1Q9UMD9 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC5.52□□□□□ -1.53
COL17A1Q9UMD9 AC078899.3-201ENST00000599065 212 ntBASIC5.52□□□□□ -1.53
COL17A1Q9UMD9 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC5.52□□□□□ -1.53
COL17A1Q9UMD9 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL17A1Q9UMD9 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
COL17A1Q9UMD9 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC5.52□□□□□ -1.53
COL17A1Q9UMD9 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
COL17A1Q9UMD9 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL17A1Q9UMD9 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL17A1Q9UMD9 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL17A1Q9UMD9 RNU6-1097P-201ENST00000363586 107 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 RNY1P14-201ENST00000384426 108 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 EIF5P1-201ENST00000400019 1231 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 AC137499.1-201ENST00000427602 88 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 AC104308.1-201ENST00000454621 333 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 AC005229.2-201ENST00000456995 399 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 Y_RNA.638-201ENST00000459374 113 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 CREM-226ENST00000469949 721 ntTSL 3 BASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 AC233702.1-201ENST00000482905 502 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 RPL23AP41-201ENST00000484754 458 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 OR4R1P-201ENST00000529879 463 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 BNIP3P6-201ENST00000549284 499 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 MIR5690-201ENST00000583739 73 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 AC073657.2-201ENST00000605661 303 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 AC092125.1-201ENST00000562568 1995 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 AC005183.1-201ENST00000603687 1979 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 XPOTP1-201ENST00000443317 2398 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 MFF-206ENST00000392059 1710 ntTSL 5 BASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 RNU5E-1-201ENST00000362477 120 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 Y_RNA.389-201ENST00000383924 113 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 RNU6-886P-201ENST00000384319 105 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 Y_RNA.506-201ENST00000384494 102 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 RNU6-441P-201ENST00000384545 106 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 AL591416.1-201ENST00000404015 867 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 RPL31P52-201ENST00000407532 367 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 AP000275.1-201ENST00000411943 390 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 RPS26P56-201ENST00000444468 240 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 AC022431.1-201ENST00000450941 438 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 TRBV26-201ENST00000456572 344 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 AC084198.1-201ENST00000477747 402 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 AC092451.1-201ENST00000480211 153 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 Y_RNA.661-201ENST00000516003 99 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 AL121603.1-201ENST00000553815 142 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 IGKV2OR2-8-201ENST00000558710 300 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 AC136601.2-201ENST00000604356 474 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 AC130324.3-201ENST00000614165 542 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 AL354950.2-201ENST00000617939 290 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 AP000553.6-201ENST00000641242 118 ntBASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL17A1Q9UMD9 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC5.5□□□□□ -1.53
COL17A1Q9UMD9 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL17A1Q9UMD9 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC5.5□□□□□ -1.53
COL17A1Q9UMD9 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL17A1Q9UMD9 AP000542.2-201ENST00000623199 6179 ntBASIC5.5□□□□□ -1.53
COL17A1Q9UMD9 AC011266.1-201ENST00000624119 3569 ntBASIC5.5□□□□□ -1.53
COL17A1Q9UMD9 AC093849.1-201ENST00000563631 2209 ntBASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 142.1 ms